C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: speckle-type POZ protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000509869 SPOP-022 ENSG00000121067 9606 - 17:49607250-49619304 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000877 CIL_000877_0001 VISTA 17:49438854-50041456
CIL_0009BV CIL_0009BV_0001 VISTA 17:49438877-50041441
CIL_0007QJ CIL_0007QJ_0001 VISTA 17:49459872-50061823
CIL_0004N3 CIL_0004N3_0002 CGP 17:49575858-49678234
CIL_0004N2 CIL_0004N2_0002 CGP 17:49598884-49709014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107724 Spop-002 protein_coding Mus_musculus 0 459
ENSMUST00000107722 Spop-001 protein_coding Mus_musculus 0 459
ENSMUST00000150922 Spop-005 processed_transcript Mus_musculus 0 320
ENSDART00000129143 spopla-201 protein_coding Danio_rerio 0 237
ENSDART00000011922 spopla-001 protein_coding Danio_rerio 0 237
ENSMUST00000098879 Tdpoz5-201 protein_coding Mus_musculus 0 209
ENSMUST00000091692 Gm10697-201 protein_coding Mus_musculus 0 209
ENSMUST00000075953 Tdpoz4-201 protein_coding Mus_musculus 0 198

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