C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: speckle-type POZ protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107722 Spop-001 ENSMUSG00000057522 10090 + 11:95414098-95493406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107722
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107722 13.656±5.62 29.495±2.74 28.992±4.24 8.405±3.81 20.802±6.50 26.558±3.74 42.790±12.13 16.918±6.01 17.209±6.19 46.483±22.56 61.186±8.66 20.447±5.96 7.440±4.47 7.846±4.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QJ CIL_0007QJ_0002 VISTA 11:95039208-95641127
CIL_000877 CIL_000877_0002 VISTA 11:95055809-95658196
CIL_0009BV CIL_0009BV_0002 VISTA 11:95055825-95658170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001085 IPI RNA polymerase II transcription factor binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0016607 IDA nuclear speck
GO:0031463 ISS Cul3-RING ubiquitin ligase complex
GO:0031625 IEA ubiquitin protein ligase binding
GO:0042593 IGI glucose homeostasis
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IGI:ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:1902237 IGI positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:2000676 IGI positive regulation of type B pancreatic cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000011922 spopla-001 protein_coding Danio_rerio 0 527
ENSDART00000129143 spopla-201 protein_coding Danio_rerio 0 505
ENST00000347630 SPOP-201 protein_coding Homo_sapiens 0 2359
ENST00000393328 SPOP-001 protein_coding Homo_sapiens 0 2362
ENST00000451526 SPOP-017 protein_coding Homo_sapiens 0 226
ENST00000502385 SPOP-018 processed_transcript Homo_sapiens 0 198
ENST00000503676 SPOP-007 protein_coding Homo_sapiens 0 1879
ENST00000504102 SPOP-005 protein_coding Homo_sapiens 0 2167
ENST00000504212 SPOP-019 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000504889 SPOP-023 retained_intron Homo_sapiens 0 278
ENST00000505581 SPOP-011 protein_coding Homo_sapiens 0 1122
ENST00000506399 SPOP-015 nonsense_mediated_decay Homo_sapiens 0 767
ENST00000507551 SPOP-024 retained_intron Homo_sapiens 0 313
ENST00000507970 SPOP-013 protein_coding Homo_sapiens 0 905
ENST00000508805 SPOP-010 protein_coding Homo_sapiens 0 270
ENST00000509079 SPOP-012 protein_coding Homo_sapiens 0 1206
ENST00000509765 SPOP-014 retained_intron Homo_sapiens 0 381
ENST00000509869 SPOP-022 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000510476 SPOP-008 protein_coding Homo_sapiens 0 392
ENST00000513080 SPOP-016 processed_transcript Homo_sapiens 0 577
ENST00000514121 SPOP-009 protein_coding Homo_sapiens 0 715
ENST00000515508 SPOP-020 protein_coding Homo_sapiens 0 632
ENST00000572686 SPOP-025 retained_intron Homo_sapiens 0 913
ENST00000577134 SPOP-026 retained_intron Homo_sapiens 0 558

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