C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: speckle-type POZ protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000121067 SPOP 9606 - 17:49598884-49678234 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347630 SPOP-201 49598886-49678163 protein_coding
  ENST00000393328 SPOP-001 49598884-49678110 protein_coding
  ENST00000451526 SPOP-017 49622050-49678046 protein_coding
  ENST00000502385 SPOP-018 49622206-49678110 processed_transcript
  ENST00000503676 SPOP-007 49600203-49646630 protein_coding
  ENST00000504102 SPOP-005 49600006-49678234 protein_coding
  ENST00000504212 SPOP-019 49619319-49678003 nonsense_mediated_decay
  ENST00000504889 SPOP-023 49607068-49611318 retained_intron
  ENST00000505581 SPOP-011 49607874-49678085 protein_coding
  ENST00000506399 SPOP-015 49611338-49678106 nonsense_mediated_decay
  ENST00000507551 SPOP-024 49600309-49602398 retained_intron
  ENST00000507970 SPOP-013 49611381-49678055 protein_coding
  ENST00000508805 SPOP-010 49622025-49678005 protein_coding
  ENST00000509079 SPOP-012 49607300-49678110 protein_coding
  ENST00000509765 SPOP-014 49622414-49678082 retained_intron
  ENST00000509869 SPOP-022 49607250-49619304 nonsense_mediated_decay
  ENST00000510476 SPOP-008 49621946-49646622 protein_coding
  ENST00000513080 SPOP-016 49619308-49678113 processed_transcript
  ENST00000514121 SPOP-009 49619046-49678099 protein_coding
  ENST00000515508 SPOP-020 49619234-49678025 protein_coding
  ENST00000572686 SPOP-025 49599497-49601631 retained_intron
  ENST00000577134 SPOP-026 49600279-49602041 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347630ENST00000393328ENST00000503676ENST00000504102ENST00000572686ENST00000577134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347630 N/A 3.276±0.00 N/A 1.418±0.00 N/A 1.996±0.00 2.201±0.00 N/A 1.612±0.00 N/A 4.854±0.00 N/A 2.318±0.24 5.851±0.00
ENST00000393328 3.039±0.00 4.703±0.00 N/A 4.940±0.50 8.167±0.00 11.950±0.00 5.913±0.00 3.584±0.65 3.157±0.00 4.423±0.00 N/A 16.490±0.00 5.820±3.66 3.333±1.35
ENST00000503676 N/A N/A N/A N/A N/A N/A N/A N/A 6.199±0.00 N/A 3.058±0.00 N/A N/A N/A
ENST00000504102 N/A 7.116±0.00 1.555±0.00 8.436±0.00 3.337±1.05 N/A 3.629±2.01 N/A 4.215±0.00 6.456±3.31 4.610±0.00 9.011±4.36 6.173±0.95 7.044±0.00
ENST00000572686 N/A N/A N/A N/A 2.174±0.00 1.821±0.00 1.181±0.00 N/A 3.379±0.00 4.075±0.00 N/A 3.618±1.35 N/A 2.340±0.00
ENST00000577134 N/A N/A N/A N/A N/A N/A N/A 18.337±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000877 CIL_000877_0001 VISTA 17:49438854-50041456
CIL_0009BV CIL_0009BV_0001 VISTA 17:49438877-50041441
CIL_0007QJ CIL_0007QJ_0001 VISTA 17:49459872-50061823
CIL_0004N3 CIL_0004N3_0002 CGP 17:49575858-49678234
CIL_0004N2 CIL_0004N2_0002 CGP 17:49598884-49709014

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001085 IEA RNA polymerase II transcription factor binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0016607 IEA nuclear speck
GO:0031463 IDA Cul3-RING ubiquitin ligase complex
GO:0031625 IPI ubiquitin protein ligase binding
GO:0042593 IEA glucose homeostasis
GO:0042787 IEA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:1902237 IEA positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:2000676 IEA positive regulation of type B pancreatic cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038215 spop speckle-type POZ protein protein_coding Danio_rerio
ENSMUSG00000057522 Spop speckle-type POZ protein protein_coding Mus_musculus

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