C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTF2H2 family member C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000510979 GTF2H2C-001 ENSG00000183474 9606 + 5:69560242-69593767 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000510979
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000510979 1.006±0.00 1.300±0.00 0.751±0.00 1.194±0.00 1.610±0.00 0.441±0.00 0.458±0.34 2.061±0.00 0.306±0.09 0.665±0.00 0.287±0.00 1.364±0.91 0.390±0.12 1.199±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K7 CIL_0005K7_0002 CGP 5:69492292-69594723

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0006281 IEA DNA repair
GO:0006289 IEA nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066984 Gtf2h2-001 protein_coding Mus_musculus 0 1568
ENSMUST00000145266 Gtf2h2-003 nonsense_mediated_decay Mus_musculus 0 1565
ENSMUST00000142182 Gtf2h2-004 retained_intron Mus_musculus 0 1140
ENSMUST00000066940 Gtf2h2-006 protein_coding Mus_musculus 0 671
ENSMUST00000134842 Gtf2h2-002 nonsense_mediated_decay Mus_musculus 0 671
ENSMUST00000124644 Gtf2h2-008 processed_transcript Mus_musculus 0 422
ENSMUST00000152049 Gtf2h2-007 processed_transcript Mus_musculus 0 361
ENSMUST00000147229 Gtf2h2-005 retained_intron Mus_musculus 0 361

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