C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000511316 HMGB2-002 ENSG00000164104 9606 - 4:173331705-173334432 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverLungENST00000511316
Transcript ID Bladder Liver Lung
ENST00000511316 0.730±0.00 0.888±0.00 0.955±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00007T CIL_00007T_0002 CGP 4:173168753-173335125
CIL_0008VG CIL_0008VG_0001 VISTA 4:173198350-173802625
CIL_0008BZ CIL_0008BZ_0001 VISTA 4:173215162-173815719

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067925 Hmgb2-201 protein_coding Mus_musculus 0 538
ENSMUST00000121816 Gm13232-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000122151 Gm13237-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000118441 Gm13160-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000118554 Gm13167-001 processed_pseudogene Mus_musculus 0 202
ENSMUST00000119295 Gm14098-001 processed_pseudogene Mus_musculus 0 195

Loading