C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00007T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000057303-ENSDARG00000029722 CGP 7955 1:38552081-38581153
GeneTranscriptPositionBiotype
ENSDARG00000029722 (hmgb2a)
high-mobility group box 2a
ENSDART00000047159 (hmgb2a-001) 38578878-38581153 protein_coding
ENSDART00000137451 (hmgb2a-004) 38579182-38581014 protein_coding
ENSDART00000142060 (hmgb2a-002) 38580050-38581018 retained_intron
ENSDART00000142811 (hmgb2a-003) 38579800-38580363 protein_coding
ENSDARG00000057303 (galnt7)
UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
ENSDART00000079928 (galnt7-001) 38552081-38576180 protein_coding
ENSDART00000114903 (galnt7-201) 38552424-38580268 protein_coding
ENSDART00000135666 (galnt7-002) 38563310-38571942 protein_coding
ENSDART00000140239 (galnt7-003) 38555774-38563925 retained_intron
CIL_00007T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000109586-ENSG00000164104 CGP 9606 4:173168753-173335125
GeneTranscriptPositionBiotype
ENSG00000109586 (GALNT7)
polypeptide N-acetylgalactosaminyltransferase 7
ENST00000265000 (GALNT7-001) 173168753-173323967 protein_coding
ENST00000502407 (GALNT7-007) 173282435-173295760 processed_transcript
ENST00000503213 (GALNT7-005) 173304019-173318660 protein_coding
ENST00000505308 (GALNT7-003) 173292131-173322011 protein_coding
ENST00000506317 (GALNT7-006) 173298036-173314037 retained_intron
ENST00000512285 (GALNT7-004) 173168811-173298371 protein_coding
ENST00000515862 (GALNT7-002) 173315841-173323127 retained_intron
ENSG00000164104 (HMGB2)
high mobility group box 2
ENST00000296503 (HMGB2-001) 173331695-173335125 protein_coding
ENST00000438704 (HMGB2-004) 173331701-173333672 protein_coding
ENST00000446922 (HMGB2-003) 173331701-173334391 protein_coding
ENST00000506267 (HMGB2-005) 173332889-173334249 protein_coding
ENST00000511316 (HMGB2-002) 173331705-173334432 retained_intron
ENSG00000248774 (RP11-798M19.3)
ENST00000507803 (RP11-798M19.3-001) 173322206-173329694 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00007T_0001ENSDARG00000029722ENSDART00000047159ENSDART00000137451ENSDART00000142060ENSDART00000142811ENSDARG00000057303ENSDART00000079928ENSDART00000114903ENSDART00000135666ENSDART00000140239CIL_00007T_0002ENSG00000109586ENST00000265000ENST00000502407ENST00000503213ENST00000505308ENST00000506317ENST00000512285ENST00000515862ENSG00000164104ENST00000296503ENST00000438704ENST00000446922ENST00000506267ENST00000511316ENSG00000248774ENST00000507803
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00007T_0001ENSDARG00000029722ENSDART00000047159ENSDART00000137451ENSDARG00000057303ENSDART00000079928CIL_00007T_0002ENSG00000109586ENST00000265000ENST00000503213ENST00000505308ENST00000506317ENST00000512285ENST00000515862ENSG00000164104ENST00000296503ENST00000438704ENST00000446922ENST00000506267ENST00000511316ENSG00000248774ENST00000507803
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029722 ENSDART00000047159 N/A N/A N/A 44.205±24.61 N/A N/A 425.429±233.94 669.326±249.76 4.281±0.00 N/A 42.227±0.00 N/A N/A N/A
ENSDART00000137451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.913±0.00 N/A N/A N/A
ENSDART00000142060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000057303 ENSDART00000079928 N/A N/A N/A 12.868±2.57 N/A N/A 8.839±0.00 N/A 0.281±0.00 N/A 2.544±0.00 N/A N/A N/A
ENSDART00000114903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109586 ENST00000265000 1.022±0.00 1.099±0.00 N/A 0.669±0.22 2.263±0.73 3.814±0.32 0.588±0.51 2.138±1.97 N/A 1.668±0.04 0.113±0.08 3.815±1.47 3.748±1.39 2.933±0.75
ENST00000502407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503213 N/A N/A N/A N/A N/A N/A N/A 1.277±0.00 N/A N/A N/A N/A N/A N/A
ENST00000505308 0.943±0.00 N/A N/A 1.114±0.00 N/A N/A N/A N/A 1.189±0.00 N/A N/A 2.903±0.00 N/A 2.166±0.00
ENST00000506317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.081±0.00 16.447±0.00 6.858±0.00 N/A
ENST00000512285 N/A N/A 0.543±0.00 N/A 2.467±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A
ENSG00000164104 ENST00000296503 N/A N/A 0.367±0.00 1.826±0.32 0.983±0.00 4.252±0.00 1.206±0.00 0.639±0.00 0.529±0.00 2.207±0.00 0.675±0.00 5.877±1.57 N/A 23.901±15.94
ENST00000438704 45.826±0.00 18.477±0.00 N/A 8.188±6.79 8.299±5.77 46.310±0.00 5.995±5.21 19.539±0.00 2.317±0.79 21.656±0.00 14.648±0.00 71.057±34.65 48.649±26.64 74.049±24.98
ENST00000446922 16.404±0.00 9.955±0.00 0.779±0.00 4.838±0.00 6.868±0.00 10.329±6.76 4.759±0.00 4.017±0.00 0.937±0.40 11.717±10.04 N/A 16.581±12.45 14.875±9.22 14.343±0.00
ENST00000506267 N/A N/A N/A N/A N/A N/A 1.002±0.00 0.434±0.00 3.206±0.00 N/A 1.631±0.00 N/A N/A N/A
ENST00000511316 N/A N/A 0.730±0.00 N/A N/A N/A N/A N/A 0.888±0.00 0.955±0.00 N/A N/A N/A N/A
ENSG00000248774 ENST00000507803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.096±0.00 8.675±0.00

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