C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514631 RP11-397E7.4-001 ENSG00000251411 9606 - 4:86913266-86914817 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000514631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000514631 0.348±0.00 0.264±0.00 0.153±0.00 0.031±0.00 0.527±0.00 0.113±0.00 0.198±0.00 0.477±0.00 0.013±0.00 0.139±0.03 0.038±0.00 0.088±0.02 0.094±0.01 0.222±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006J3 CIL_0006J3_0001 CGP 4:86823468-86936202
CIL_0006J2 CIL_0006J2_0001 CGP 4:86876205-87141054

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031625 Arpc1a-001 protein_coding Mus_musculus 0 1088
ENSMUST00000127694 Arpc1a-002 processed_transcript Mus_musculus 0 721
ENSMUST00000142276 Arpc1a-006 retained_intron Mus_musculus 0 320
ENSMUST00000147564 Arpc1a-005 retained_intron Mus_musculus 4.99997e-41 172

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