C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031625 Arpc1a-001 ENSMUSG00000029621 10090 + 5:145083830-145108761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031625 73.581±8.76 49.472±10.15 139.889±17.17 78.539±18.72 53.324±10.52 52.556±7.59 30.522±3.21 66.647±2.09 39.806±6.98 70.709±1.92 11.757±0.85 64.365±15.40 53.962±17.83 67.274±21.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TQ CIL_0004TQ_0002 CGP 5:144876495-145084030
CIL_0005L5 CIL_0005L5_0003 CGP 5:145083830-145130705

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0005885 TAS Arp2/3 protein complex
GO:0008150 ND biological_process
GO:0030833 IEA regulation of actin filament polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262942 ARPC1A-001 protein_coding Homo_sapiens 0 1644
ENST00000432786 ARPC1A-009 nonsense_mediated_decay Homo_sapiens 0 1589
ENST00000441989 ARPC1A-003 nonsense_mediated_decay Homo_sapiens 0 1256
ENST00000463009 ARPC1A-004 processed_transcript Homo_sapiens 0 488
ENST00000471960 ARPC1A-005 processed_transcript Homo_sapiens 0 623
ENST00000477240 ARPC1A-007 retained_intron Homo_sapiens 0 248
ENST00000511688 CTD-2060C23.1-001 processed_pseudogene Homo_sapiens 0 1136
ENST00000514631 RP11-397E7.4-001 processed_pseudogene Homo_sapiens 0 1088
ENST00000597698 CTD-2620I22.2-001 processed_pseudogene Homo_sapiens 0 1282

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