C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: actin related protein 2/3 complex, subunit 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142276 Arpc1a-006 ENSMUSG00000029621 10090 + 5:145104273-145108592 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryENSMUST00000142276
Transcript ID Brain Ovary
ENSMUST00000142276 27.402±0.00 13.467±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TQ CIL_0004TQ_0002 CGP 5:144876495-145084030
CIL_0005L5 CIL_0005L5_0003 CGP 5:145083830-145130705

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262942 ARPC1A-001 protein_coding Homo_sapiens 0 488
ENST00000432786 ARPC1A-009 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000441989 ARPC1A-003 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000463009 ARPC1A-004 processed_transcript Homo_sapiens 0 496
ENST00000471960 ARPC1A-005 processed_transcript Homo_sapiens 5e-20 102
ENST00000477240 ARPC1A-007 retained_intron Homo_sapiens 0 248
ENST00000514631 RP11-397E7.4-001 processed_pseudogene Homo_sapiens 0 320
ENST00000597698 CTD-2620I22.2-001 processed_pseudogene Homo_sapiens 0 370

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