C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein with multiple splicing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000517860 RBPMS-007 ENSG00000157110 9606 + 8:30385085-30545164 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D0 CIL_0008D0_0001 VISTA 8:29977526-30581393
CIL_0008IH CIL_0008IH_0001 VISTA 8:30111104-30714589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191473 Rbpms-201 protein_coding Mus_musculus 0 826
ENSMUST00000033995 Rbpms-003 protein_coding Mus_musculus 0 826
ENSMUST00000182987 Rbpms-004 nonsense_mediated_decay Mus_musculus 0 826
ENSMUST00000053251 Rbpms-002 protein_coding Mus_musculus 0 826
ENSMUST00000183088 Rbpms-007 protein_coding Mus_musculus 0 647
ENSMUST00000033994 Rbpms-001 protein_coding Mus_musculus 0 628
ENSMUST00000182184 Rbpms-005 processed_transcript Mus_musculus 0 468
ENSMUST00000182256 Rbpms-009 nonsense_mediated_decay Mus_musculus 0 468
ENSMUST00000183062 Rbpms-010 protein_coding Mus_musculus 0 431
ENSMUST00000182871 Rbpms-006 processed_transcript Mus_musculus 0 217
ENSMUST00000183336 Rbpms-012 nonsense_mediated_decay Mus_musculus 0 189
ENSMUST00000182926 Rbpms-011 nonsense_mediated_decay Mus_musculus 4e-27 126

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