C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDNF family receptor alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000517892 GFRA2-004 ENSG00000168546 9606 - 8:21693281-21788474 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverMuscleOvaryTestisENST00000517892
Transcript ID Bladder Breast Kidney Liver Muscle Ovary Testis
ENST00000517892 0.183±0.00 0.183±0.00 0.119±0.00 0.679±0.00 0.169±0.00 0.271±0.20 1.171±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000810 CIL_000810_0001 VISTA 8:21687877-22288944
CIL_0005VE CIL_0005VE_0003 CGP 8:21690403-21913860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007169 TAS transmembrane receptor protein tyrosine kinase signaling pathway
GO:0019898 TAS extrinsic component of membrane
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022699 Gfra2-201 protein_coding Mus_musculus 0 1367
ENSDART00000105709 gfra1b-202 protein_coding Danio_rerio 5e-37 159
ENSDART00000005456 gfra1b-201 protein_coding Danio_rerio 5e-37 159
ENSDART00000150320 gfra1b-001 protein_coding Danio_rerio 5e-37 159

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