C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glial cell line derived neurotrophic factor family receptor alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022699 Gfra2-201 ENSMUSG00000022103 10090 + 14:70890130-70979838 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022699
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022699 1.606±0.65 2.897±0.74 4.318±0.20 4.527±2.02 6.194±2.85 2.445±0.81 0.483±0.09 0.188±0.07 0.819±0.74 6.558±1.94 0.506±0.16 1.278±0.52 0.258±0.16 5.385±2.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000812 CIL_000812_0002 VISTA 14:70334498-70935318
CIL_0008ZI CIL_0008ZI_0002 VISTA 14:70339990-70941193
CIL_000810 CIL_000810_0002 VISTA 14:70383794-70984839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0007169 IGI transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007399 IMP nervous system development
GO:0016167 IEA glial cell-derived neurotrophic factor receptor activity
GO:0031225 IEA anchored component of membrane
GO:0031953 IEA negative regulation of protein autophosphorylation
GO:0035860 IEA glial cell-derived neurotrophic factor receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306793 GFRA2-002 nonsense_mediated_decay Homo_sapiens 0 1860
ENST00000355422 GFRA1-002 protein_coding Homo_sapiens 8e-28 130
ENST00000369234 GFRA1-003 protein_coding Homo_sapiens 5e-28 130
ENST00000369236 GFRA1-001 protein_coding Homo_sapiens 3e-27 130
ENST00000439649 GFRA1-201 protein_coding Homo_sapiens 3e-27 130
ENST00000517328 GFRA2-005 protein_coding Homo_sapiens 0 1954
ENST00000517892 GFRA2-004 protein_coding Homo_sapiens 0 1367
ENST00000518077 GFRA2-003 protein_coding Homo_sapiens 0 1288
ENST00000519195 GFRA2-007 protein_coding Homo_sapiens 0 569
ENST00000520676 GFRA2-008 processed_transcript Homo_sapiens 0 507
ENST00000522071 GFRA2-006 protein_coding Homo_sapiens 0 1186
ENST00000524240 GFRA2-001 protein_coding Homo_sapiens 0 2409

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