C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518241 RP11-678D18.1-001 ENSG00000213873 9606 + 8:65377592-65378111 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyENST00000518241
Transcript ID Brain Colon Kidney
ENST00000518241 0.031±0.00 0.027±0.00 0.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003G9 CIL_0003G9_0001 CGP 8:64587763-65634217
CIL_0007NS CIL_0007NS_0003 UCNEbase 8:64847530-65455399
CIL_0007VL CIL_0007VL_0001 VISTA 8:64936692-65537601

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 540
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 527
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 507
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 486
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000117621 Gm13750-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000121819 Gm6044-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 399

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