C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: transmembrane and coiled-coil domain family 1 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518897 TMCC1P1-001 ENSG00000253318 9606 - 8:105194990-105196969 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000518897
Transcript ID Brain
ENST00000518897 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OF CIL_0007OF_0001 UCNEbase 8:104531728-105804547
CIL_00060E CIL_00060E_0001 CGP 8:104590733-106752694
CIL_0008B6 CIL_0008B6_0001 VISTA 8:104649296-105251466
CIL_0008OP CIL_0008OP_0001 VISTA 8:104789695-105391207
CIL_0008UU CIL_0008UU_0001 VISTA 8:105021302-105622631

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088896 Tmcc1-001 protein_coding Mus_musculus 0 1245
ENSMUST00000173110 Tmcc1-004 nonsense_mediated_decay Mus_musculus 0 774
ENSMUST00000172510 Tmcc1-008 protein_coding Mus_musculus 0 774
ENSMUST00000032222 Tmcc1-003 protein_coding Mus_musculus 0 774
ENSMUST00000173548 Tmcc1-007 processed_transcript Mus_musculus 0 623
ENSMUST00000173140 Tmcc1-009 protein_coding Mus_musculus 0 507

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