C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein with multiple splicing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519359 RBPMS-020 ENSG00000157110 9606 + 8:30474786-30570700 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D0 CIL_0008D0_0001 VISTA 8:29977526-30581393
CIL_0008IH CIL_0008IH_0001 VISTA 8:30111104-30714589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191473 Rbpms-201 protein_coding Mus_musculus 0 496
ENSMUST00000182184 Rbpms-005 processed_transcript Mus_musculus 0 496
ENSMUST00000182256 Rbpms-009 nonsense_mediated_decay Mus_musculus 0 496
ENSMUST00000182987 Rbpms-004 nonsense_mediated_decay Mus_musculus 0 496
ENSMUST00000183088 Rbpms-007 protein_coding Mus_musculus 0 483
ENSMUST00000033995 Rbpms-003 protein_coding Mus_musculus 0 483
ENSMUST00000033994 Rbpms-001 protein_coding Mus_musculus 0 483
ENSMUST00000053251 Rbpms-002 protein_coding Mus_musculus 0 483
ENSMUST00000183336 Rbpms-012 nonsense_mediated_decay Mus_musculus 0 291
ENSMUST00000183062 Rbpms-010 protein_coding Mus_musculus 0 263
ENSMUST00000182871 Rbpms-006 processed_transcript Mus_musculus 0 198
ENSMUST00000182926 Rbpms-011 nonsense_mediated_decay Mus_musculus 4e-26 122

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