C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519658 CTD-3107M8.2-001 ENSG00000254152 9606 - 8:30349866-30350347 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000519658
Transcript ID Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000519658 0.120±0.00 0.030±0.00 0.027±0.00 0.026±0.00 0.059±0.00 0.261±0.10 0.026±0.00 0.076±0.00 0.122±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D0 CIL_0008D0_0001 VISTA 8:29977526-30581393
CIL_0008IH CIL_0008IH_0001 VISTA 8:30111104-30714589

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 475
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 470
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 459
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 449
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 448
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 440
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000120735 Gm5883-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 429
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 0 422
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 387
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000119162 Gm15621-001 processed_pseudogene Mus_musculus 0 350
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000121223 Gm12632-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000118166 Gm13454-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000069552 Gm5160-201 protein_coding Mus_musculus 5.00264e-43 178

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