C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein with multiple splicing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520916 RBPMS-005 ENSG00000157110 9606 + 8:30564050-30570994 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainHeartKidneyMuscleENST00000520916
Transcript ID Adrenal Bladder Brain Heart Kidney Muscle
ENST00000520916 7.339±0.00 4.756±0.00 0.291±0.00 1.130±0.00 0.461±0.00 0.859±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D0 CIL_0008D0_0001 VISTA 8:29977526-30581393
CIL_0008IH CIL_0008IH_0001 VISTA 8:30111104-30714589

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191473 Rbpms-201 protein_coding Mus_musculus 0 375
ENSMUST00000182987 Rbpms-004 nonsense_mediated_decay Mus_musculus 0 375
ENSMUST00000033994 Rbpms-001 protein_coding Mus_musculus 0 375
ENSMUST00000182256 Rbpms-009 nonsense_mediated_decay Mus_musculus 0 291
ENSMUST00000183336 Rbpms-012 nonsense_mediated_decay Mus_musculus 0 279
ENSMUST00000182184 Rbpms-005 processed_transcript Mus_musculus 0 270

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