Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	protocadherin gamma subfamily B, 1
ENST00000523390	PCDHGB1-001	ENSG00000254221	9606	+	5:141350261-141512979	protein_coding

Expression Patterns

No expression data.

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_000630	CIL_000630_000Q	CGP	5:141330571-141512981
CIL_000630	CIL_000630_000P	CGP	5:141338760-141512979
CIL_000630	CIL_000630_0012	CGP	5:141343829-141512979
CIL_000630	CIL_000630_0011	CGP	5:141350102-141512979

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005509	IEA	calcium ion binding
GO:0005886	IEA	plasma membrane
GO:0007156	IEA	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020	IEA	membrane
GO:0016021	IEA	integral component of membrane

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000055935	Pcdhga12-203	protein_coding	Mus_musculus	0	1123
ENSMUST00000073447	Pcdhga12-207	protein_coding	Mus_musculus	0	1123
ENSMUST00000003599	Pcdhga12-201	protein_coding	Mus_musculus	0	1123
ENSMUST00000066140	Pcdhga12-205	protein_coding	Mus_musculus	0	1123
ENSMUST00000091935	Pcdhga12-209	protein_coding	Mus_musculus	0	1123
ENSMUST00000044851	Pcdhga12-202	protein_coding	Mus_musculus	0	1123
ENSMUST00000061279	Pcdhga12-204	protein_coding	Mus_musculus	0	1123
ENSMUST00000076807	Pcdhga12-208	protein_coding	Mus_musculus	0	1123
ENSMUST00000066149	Pcdhga12-206	protein_coding	Mus_musculus	0	1123
ENSMUST00000115661	Pcdha10-208	protein_coding	Mus_musculus	0	568

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