C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth arrest-specific 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000524701 GAS2-003 ENSG00000148935 9606 + 11:22668108-22813001 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonENST00000524701
Transcript ID Brain Colon
ENST00000524701 0.438±0.00 0.272±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FU CIL_0003FU_0001 CGP 11:22338097-22626787
CIL_00088G CIL_00088G_0001 VISTA 11:22474995-23077197
CIL_0004AS CIL_0004AS_0002 CGP 11:22622519-22813055
CIL_0000L8 CIL_0000L8_0001 CGP 11:22625642-22830299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0005884 TAS actin filament
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0007050 IEA cell cycle arrest
GO:0008360 IEA regulation of cell shape
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129604 Gas2-003 nonsense_mediated_decay Mus_musculus 0 726
ENSMUST00000107591 Gas2-002 protein_coding Mus_musculus 0 726
ENSMUST00000051912 Gas2-001 protein_coding Mus_musculus 0 726
ENSMUST00000145049 Gas2-006 protein_coding Mus_musculus 0 606
ENSMUST00000107589 Gas2-004 protein_coding Mus_musculus 0 525
ENSMUST00000155925 Gas2-007 processed_transcript Mus_musculus 0 429

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