C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial {ECO:0000313|Ensembl:ENSP00000456407}
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527595 NDUFB8-003 ENSG00000255339 9606 - 10:100505805-100529871 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0001 VISTA 10:100185085-100786577
CIL_00082U CIL_00082U_0001 VISTA 10:100312457-100914449
CIL_00082V CIL_00082V_0001 VISTA 10:100315129-100915721
CIL_00093R CIL_00093R_0001 VISTA 10:100355158-100955821
CIL_00093O CIL_00093O_0001 VISTA 10:100359362-100959974
CIL_0008BC CIL_0008BC_0001 VISTA 10:100387324-100989228
CIL_0005E1 CIL_0005E1_0001 CGP 10:100463041-100519864
CIL_0001CC CIL_0001CC_0002 CGP 10:100486642-100529881
CIL_0008BD CIL_0008BD_0001 VISTA 10:100486833-101088338
CIL_0007U1 CIL_0007U1_0001 VISTA 10:100491715-101092615

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003954 IEA NADH dehydrogenase activity
GO:0005739 IEA mitochondrion
GO:0008137 IEA NADH dehydrogenase (ubiquinone) activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111985 Sec31b-002 protein_coding Mus_musculus 0 691
ENSMUST00000063632 Sec31b-001 protein_coding Mus_musculus 0 691
ENSMUST00000026222 Ndufb8-001 protein_coding Mus_musculus 0 331
ENSMUST00000171415 Ndufb8-002 protein_coding Mus_musculus 0 331
ENSMUST00000169181 Ndufb8-007 retained_intron Mus_musculus 0 320
ENSMUST00000167027 Ndufb8-006 protein_coding Mus_musculus 0 267
ENSMUST00000186274 RP23-466P2.2-001 transcribed_processed_pseudogene Mus_musculus 0 261
ENSMUST00000190841 RP23-466P2.2-002 processed_transcript Mus_musculus 0 261
ENSMUST00000168083 Ndufb8-005 nonsense_mediated_decay Mus_musculus 0 217
ENSMUST00000169304 Ndufb8-009 protein_coding Mus_musculus 1.00053e-42 178

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