C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec31 homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063632 Sec31b-001 ENSMUSG00000051984 10090 - 19:44516957-44545864 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalMuscleOvaryENSMUST00000063632
Transcript ID Adrenal Muscle Ovary
ENSMUST00000063632 6.171±0.97 11.540±0.64 4.793±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0002 VISTA 19:44214132-44815870
CIL_00082U CIL_00082U_0002 VISTA 19:44330970-44933041
CIL_00082V CIL_00082V_0002 VISTA 19:44333644-44934226
CIL_00093R CIL_00093R_0002 VISTA 19:44370805-44971431
CIL_00093O CIL_00093O_0002 VISTA 19:44374626-44975238
CIL_0008BC CIL_0008BC_0002 VISTA 19:44398597-45000718
CIL_0005E1 CIL_0005E1_0002 CGP 19:44493472-44545864
CIL_0008BD CIL_0008BD_0002 VISTA 19:44496521-45098014
CIL_0007U1 CIL_0007U1_0002 VISTA 19:44501251-45102539
CIL_0001CC CIL_0001CC_0003 CGP 19:44516957-44552831

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030120 ISO vesicle coat

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370345 SEC31B-003 protein_coding Homo_sapiens 0 1932
ENST00000462434 SEC31B-004 nonsense_mediated_decay Homo_sapiens 0 1142
ENST00000469546 SEC31B-013 nonsense_mediated_decay Homo_sapiens 0 1151
ENST00000479697 SEC31B-009 nonsense_mediated_decay Homo_sapiens 0 1655
ENST00000480905 SEC31B-001 nonsense_mediated_decay Homo_sapiens 0 472
ENST00000482456 SEC31B-010 nonsense_mediated_decay Homo_sapiens 0 1029
ENST00000484848 SEC31B-008 retained_intron Homo_sapiens 0 994
ENST00000527595 NDUFB8-003 nonsense_mediated_decay Homo_sapiens 0 691
ENST00000528174 NDUFB8-004 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000529568 NDUFB8-002 nonsense_mediated_decay Homo_sapiens 0 1151
ENST00000557395 NDUFB8-001 nonsense_mediated_decay Homo_sapiens 0 244

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