C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: D4, zinc and double PHD fingers family 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528416 DPF2-001 ENSG00000133884 9606 + 11:65333754-65353249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLungMuscleOvaryPlacentaENST00000528416
Transcript ID Breast Heart Lung Muscle Ovary Placenta
ENST00000528416 1.099±0.00 1.134±0.00 2.080±0.00 2.758±0.00 17.347±0.00 3.300±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0001 VISTA 11:65187233-65790923
CIL_0003XD CIL_0003XD_0002 CGP 11:65314818-65353249

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 TAS apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding
GO:0097190 TAS apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136983 Dpf2-001 protein_coding Mus_musculus 0 1705
ENSMUST00000118623 Dpf2-002 protein_coding Mus_musculus 0 898
ENSMUST00000123029 Dpf2-005 retained_intron Mus_musculus 0 876
ENSMUST00000025746 Dpf2-009 nonsense_mediated_decay Mus_musculus 0 874
ENSMUST00000129816 Dpf2-007 retained_intron Mus_musculus 0 706
ENSMUST00000142995 Dpf2-006 retained_intron Mus_musculus 0 616
ENSMUST00000178756 Dpf3-203 protein_coding Mus_musculus 0 237
ENSMUST00000147469 Dpf3-001 protein_coding Mus_musculus 0 237
ENSMUST00000155937 Dpf2-003 processed_transcript Mus_musculus 2e-19 102

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