C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | STX16-NPEPL1 readthrough (NMD candidate) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000530122  |
STX16-NPEPL1-001 |
ENSG00000254995 |
9606 | + |
20:58651434-58715410  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_000697 | CIL_000697_0002 | CGP | 20:58459101-58679526 |
| CIL_000696 | CIL_000696_0002 | CGP | 20:58651434-58719238 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005484 | IEA | SNAP receptor activity |
| GO:0005515 | IEA | protein binding |
| GO:0005730 | IDA | nucleolus |
| GO:0006886 | IEA | intracellular protein transport |
| GO:0006891 | IEA | intra-Golgi vesicle-mediated transport |
| GO:0016020 | IEA | membrane |
| GO:0016192 | IEA | vesicle-mediated transport |
| GO:0031201 | IEA | SNARE complex |
| GO:0043231 | IDA | intracellular membrane-bounded organelle |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000087908
|
Stx16-001 | protein_coding | Mus_musculus | 0 | 1138 |
|
ENSMUST00000044638
|
Stx16-201 | protein_coding | Mus_musculus | 0 | 1038 |
|
ENSMUST00000044415
|
Npepl1-001 | protein_coding | Mus_musculus | 0 | 968 |
|
ENSMUST00000156054
|
Stx16-005 | protein_coding | Mus_musculus | 0 | 813 |
|
ENSMUST00000147038
|
Stx16-003 | protein_coding | Mus_musculus | 0 | 712 |
|
ENSMUST00000153957
|
Npepl1-002 | retained_intron | Mus_musculus | 0 | 606 |
|
ENSMUST00000125502
|
Npepl1-004 | nonsense_mediated_decay | Mus_musculus | 0 | 584 |
|
ENSMUST00000136449
|
Npepl1-005 | retained_intron | Mus_musculus | 0 | 399 |
|
ENSMUST00000134876
|
Stx16-002 | protein_coding | Mus_musculus | 0 | 196 |
