C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087908 Stx16-001 ENSMUSG00000027522 10090 + 2:174076922-174099771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087908
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087908 9.372±5.31 9.672±2.52 10.443±4.73 17.807±1.07 9.122±2.52 3.832±1.63 4.752±1.24 6.201±3.07 3.646±1.37 5.345±2.02 1.393±0.35 9.741±4.25 6.143±2.60 4.655±1.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000696 CIL_000696_0003 CGP 2:174076308-174123070

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006891 IEA intra-Golgi vesicle-mediated transport
GO:0016021 IEA integral component of membrane
GO:0031201 IEA SNARE complex
GO:0042147 ISS retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355957 STX16-004 protein_coding Homo_sapiens 0 464
ENST00000358029 STX16-010 protein_coding Homo_sapiens 0 1118
ENST00000359617 STX16-018 protein_coding Homo_sapiens 0 1018
ENST00000361770 STX16-201 protein_coding Homo_sapiens 3e-33 147
ENST00000361830 STX16-202 protein_coding Homo_sapiens 0 959
ENST00000371132 STX16-001 protein_coding Homo_sapiens 0 464
ENST00000371141 STX16-002 protein_coding Homo_sapiens 0 1195
ENST00000464640 STX16-005 nonsense_mediated_decay Homo_sapiens 2e-33 147
ENST00000467096 STX16-003 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000468590 STX16-012 processed_transcript Homo_sapiens 0 741
ENST00000493301 STX16-015 nonsense_mediated_decay Homo_sapiens 0 520
ENST00000496003 STX16-014 processed_transcript Homo_sapiens 0 545
ENST00000530122 STX16-NPEPL1-001 nonsense_mediated_decay Homo_sapiens 0 1138

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