C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDP-mannose 4,6-dehydratase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530927 GMDS-007 ENSG00000112699 9606 - 6:1623806-2175991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungMuscleOvaryPlacentaTestisENST00000530927
Transcript ID Lung Muscle Ovary Placenta Testis
ENST00000530927 0.939±0.00 0.559±0.00 9.270±1.13 2.781±0.71 1.993±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SP CIL_0005SP_0002 CGP 6:1609972-2245692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005737 IC cytoplasm
GO:0007219 ISS Notch signaling pathway
GO:0008446 IDA:IEA GDP-mannose 4,6-dehydratase activity
GO:0019673 IDA:IEA GDP-mannose metabolic process
GO:0042351 IEA 'de novo' GDP-L-fucose biosynthetic process
GO:0050662 IEA coenzyme binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070401 IDA NADP+ binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041859 Gmds-001 protein_coding Mus_musculus 0 1358
ENSMUST00000178294 Gmds-002 retained_intron Mus_musculus 0 902
ENSMUST00000120553 Gm15160-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000178313 Gmds-003 processed_transcript Mus_musculus 3.9937e-43 180

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