C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear RNA export factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000532297 NXF1-001 ENSG00000162231 9606 - 11:62792171-62806302 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0001 VISTA 11:62298635-62900076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000346 IDA transcription export complex
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006405 IEA RNA export from nucleus
GO:0006406 IDA:IEA mRNA export from nucleus
GO:0006810 IEA transport
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016607 IDA nuclear speck
GO:0016973 IEA poly(A)+ mRNA export from nucleus
GO:0042405 IEA nuclear inclusion body
GO:0044822 IDA poly(A) RNA binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000010241 Nxf1-001 protein_coding Mus_musculus 0 2459
ENSMUST00000184970 Nxf1-002 protein_coding Mus_musculus 0 1223
ENSMUST00000183939 Nxf1-003 protein_coding Mus_musculus 0 747
ENSMUST00000185056 Nxf1-006 retained_intron Mus_musculus 0 682
ENSMUST00000184756 Nxf1-011 nonsense_mediated_decay Mus_musculus 0 542
ENSMUST00000184826 Nxf1-010 protein_coding Mus_musculus 0 449
ENSMUST00000183898 Nxf1-008 processed_transcript Mus_musculus 0 342
ENSMUST00000184808 Nxf1-007 retained_intron Mus_musculus 0 289
ENSMUST00000184663 Nxf1-004 protein_coding Mus_musculus 0 261

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