C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sphingomyelin phosphodiesterase 1, acid lysosomal
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533123 SMPD1-002 ENSG00000166311 9606 + 11:6390503-6394998 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonTestisENST00000533123
Transcript ID Adipose Breast Colon Testis
ENST00000533123 3.326±0.00 4.920±0.00 4.357±0.00 3.147±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079D CIL_00079D_0001 CGP 11:6318946-6394998
CIL_0004AE CIL_0004AE_0001 CGP 11:6390431-6419414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046983 Smpd1-201 protein_coding Mus_musculus 0 643

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