C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000092003-ENSDARG00000001285 CGP 7955 7:7809067-7853891
GeneTranscriptPositionBiotype
ENSDARG00000001285 (rbm14b)
RNA binding motif protein 14b 		ENSDART00000102746 (rbm14b-201) 7835606-7853891 protein_coding
ENSDART00000128633 (rbm14b-202) 7843108-7853891 protein_coding
ENSDARG00000092003 (ccs)
copper chaperone for superoxide dismutase 		ENSDART00000138948 (ccs-201) 7809067-7825455 protein_coding
CIL_0003YI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000173992-ENSG00000239306 CGP 9606 11:66592821-66627347
GeneTranscriptPositionBiotype
ENSG00000173992 (CCS)
copper chaperone for superoxide dismutase 		ENST00000310190 (CCS-009) 66593241-66605919 protein_coding
ENST00000525435 (CCS-003) 66600435-66606017 retained_intron
ENST00000526058 (CCS-004) 66593204-66599611 retained_intron
ENST00000526066 (CCS-008) 66593190-66599803 retained_intron
ENST00000530384 (CCS-002) 66593153-66605912 retained_intron
ENST00000530961 (CCS-005) 66593201-66605998 nonsense_mediated_decay
ENST00000531990 (CCS-006) 66593233-66605298 retained_intron
ENST00000533244 (CCS-001) 66592821-66606019 protein_coding
ENST00000534763 (CCS-007) 66600034-66605780 protein_coding
ENSG00000182791 (CCDC87)
coiled-coil domain containing 87 		ENST00000333861 (CCDC87-001) 66590176-66593083 protein_coding
ENSG00000199325 (RNU4-39P)
RNA, U4 small nuclear 39, pseudogene 		ENST00000362455 (RNU4-39P-201) 66614964-66615090 snRNA
ENSG00000239306 (RBM14)
RNA binding motif protein 14 		ENST00000310137 (RBM14-001) 66616582-66627347 protein_coding
ENST00000393979 (RBM14-002) 66616626-66627343 protein_coding
ENST00000409372 (RBM14-003) 66616630-66624593 protein_coding
ENST00000409738 (RBM14-014) 66616715-66626489 protein_coding
ENST00000443702 (RBM14-004) 66616646-66624467 protein_coding
ENST00000460762 (RBM14-005) 66617129-66618532 processed_transcript
ENST00000461478 (RBM14-006) 66617143-66624498 processed_transcript
ENST00000496694 (RBM14-007) 66619045-66624222 processed_transcript
ENST00000512283 (RBM14-013) 66616630-66617373 processed_transcript
ENSG00000248643 (RBM14-RBM4)
RBM14-RBM4 readthrough 		ENST00000412278 (RBM14-RBM4-004) 66616626-66646469 protein_coding
ENST00000421355 (RBM14-RBM4-003) 66616631-66644632 nonsense_mediated_decay
ENST00000500635 (RBM14-RBM4-002) 66616670-66646467 protein_coding
ENST00000511114 (RBM14-RBM4-005) 66616630-66638653 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YI_0001ENSDARG00000001285ENSDART00000102746ENSDART00000128633ENSDARG00000092003ENSDART00000138948CIL_0003YI_0002ENSG00000173992ENST00000310190ENST00000525435ENST00000526058ENST00000526066ENST00000530384ENST00000530961ENST00000531990ENST00000533244ENST00000534763ENSG00000182791ENST00000333861ENSG00000199325ENST00000362455ENSG00000239306ENST00000310137ENST00000393979ENST00000409372ENST00000409738ENST00000443702ENST00000460762ENST00000461478ENST00000496694ENST00000512283ENSG00000248643ENST00000412278ENST00000421355ENST00000500635ENST00000511114
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YI_0001ENSDARG00000001285ENSDART00000102746ENSDARG00000092003ENSDART00000138948CIL_0003YI_0002ENSG00000173992ENST00000310190ENST00000525435ENST00000526066ENST00000530384ENST00000530961ENST00000531990ENST00000533244ENST00000534763ENSG00000182791ENST00000333861ENSG00000199325ENST00000362455ENSG00000239306ENST00000310137ENST00000393979ENSG00000248643ENST00000412278ENST00000421355
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000001285 ENSDART00000102746 N/A N/A N/A N/A N/A N/A 2.528±0.19 3.440±0.54 0.896±0.00 N/A 0.907±0.00 N/A N/A N/A
ENSDART00000128633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000092003 ENSDART00000138948 N/A N/A N/A 5.591±0.00 N/A N/A 1.309±0.26 N/A 1.239±0.00 N/A 0.978±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000173992 ENST00000310190 12.867±0.00 11.189±0.00 2.211±0.00 7.434±4.92 11.932±0.00 10.182±9.28 2.461±1.60 13.392±5.43 13.523±11.68 5.206±2.43 4.101±3.28 10.540±8.07 12.552±3.60 17.202±0.00
ENST00000525435 N/A N/A N/A 0.942±0.00 0.518±0.00 N/A 1.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000526058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526066 N/A N/A N/A N/A N/A N/A 0.314±0.00 N/A 0.882±0.00 0.878±0.00 N/A N/A N/A N/A
ENST00000530384 N/A 3.552±0.00 N/A N/A 1.021±0.00 2.341±0.00 1.185±0.00 N/A 1.492±0.00 2.308±0.00 0.947±0.00 9.101±3.29 N/A 11.429±0.00
ENST00000530961 N/A 5.311±0.00 0.324±0.00 N/A N/A N/A N/A N/A N/A 2.502±0.00 N/A 7.453±0.90 N/A 12.586±0.00
ENST00000531990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.713±0.00 3.589±0.00 N/A N/A
ENST00000533244 11.974±0.00 9.843±0.00 0.318±0.00 7.418±0.00 9.020±8.44 13.709±0.00 0.192±0.00 10.646±0.00 8.656±0.00 4.508±0.00 3.306±0.00 16.731±16.35 13.544±1.70 17.895±0.00
ENST00000534763 N/A N/A N/A N/A N/A 1.131±0.00 N/A 5.614±0.00 N/A N/A N/A 2.538±0.00 N/A N/A
ENSG00000182791 ENST00000333861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.978±0.00
ENSG00000199325 ENST00000362455 0.439±0.00 1.143±0.00 N/A 0.146±0.00 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.630±0.02
ENSG00000239306 ENST00000310137 15.182±0.00 10.618±0.00 2.511±0.00 8.768±0.00 18.499±0.00 11.434±0.00 5.698±3.19 15.771±9.61 10.772±0.00 26.232±0.00 7.201±3.69 25.109±6.09 17.997±3.74 25.095±4.84
ENST00000393979 N/A N/A N/A 11.720±0.00 N/A 18.333±0.00 N/A 27.623±0.00 N/A N/A N/A N/A N/A 28.504±0.00
ENST00000409372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000248643 ENST00000412278 22.746±0.00 19.213±0.00 N/A 13.139±0.00 28.365±0.00 26.169±0.00 14.835±0.00 36.072±0.00 16.547±0.00 43.486±0.00 18.500±0.00 N/A 18.655±2.84 36.870±0.00
ENST00000421355 N/A N/A N/A N/A N/A 8.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000500635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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