C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy/beclin-1 regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534300 AMBRA1-001 ENSG00000110497 9606 - 11:46396414-46594021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungOvaryPlacentaTestisENST00000534300
Transcript ID Brain Colon Heart Lung Ovary Placenta Testis
ENST00000534300 1.903±0.00 0.600±0.00 0.537±0.00 2.262±0.00 1.008±0.00 1.182±0.21 2.599±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LK CIL_0002LK_0002 CGP 11:46385098-46594125

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005930 ISS axoneme
GO:0006914 IEA autophagy
GO:0008285 IEA negative regulation of cell proliferation
GO:0021915 IEA neural tube development
GO:0030154 IEA cell differentiation
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0045335 IEA phagocytic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111316 Ambra1-003 protein_coding Mus_musculus 0 5553
ENSMUST00000156496 Ambra1-007 processed_transcript Mus_musculus 0 3325
ENSMUST00000045705 Ambra1-002 protein_coding Mus_musculus 0 3290
ENSMUST00000124132 Ambra1-005 processed_transcript Mus_musculus 0 3169
ENSMUST00000111317 Ambra1-201 protein_coding Mus_musculus 0 2230
ENSMUST00000045699 Ambra1-004 protein_coding Mus_musculus 0 2230
ENSMUST00000099712 Ambra1-001 protein_coding Mus_musculus 0 2230
ENSMUST00000133490 Ambra1-006 processed_transcript Mus_musculus 0 926
ENSMUST00000142224 Ambra1-008 processed_transcript Mus_musculus 0 289

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