C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000535102 TBC1D17-003 ENSG00000104946 9606 + 19:49877666-49888743 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonHeartKidneyLungMuscleOvaryPlacentaENST00000535102
Transcript ID Adipose Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000535102 15.590±0.00 8.047±0.00 3.925±3.69 2.329±0.00 9.594±0.00 68.783±0.00 26.886±0.00 33.688±0.86

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0006914 IEA autophagy
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0042147 IMP retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047085 Tbc1d17-002 protein_coding Mus_musculus 0 1834
ENSMUST00000145959 Tbc1d17-001 nonsense_mediated_decay Mus_musculus 0 1755
ENSMUST00000139947 Tbc1d17-003 retained_intron Mus_musculus 0 1509
ENSMUST00000130081 Tbc1d17-004 retained_intron Mus_musculus 0 1166
ENSMUST00000153161 Tbc1d17-007 retained_intron Mus_musculus 0 464

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