C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin, actin binding protein, 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540068 CORO2B-201 ENSG00000103647 9606 + 15:68616540-68727803 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000540068
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000540068 0.747±0.00 2.013±0.00 0.542±0.00 13.678±7.66 0.570±0.00 2.027±1.50 1.031±0.00 2.757±2.66 0.322±0.00 2.036±1.13 6.613±4.89 3.007±0.13 1.247±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046P CIL_00046P_0002 CGP 15:68296533-68727806
CIL_00080E CIL_00080E_0001 VISTA 15:68398610-69001346
CIL_0008FN CIL_0008FN_0001 VISTA 15:68430786-69031787
CIL_0004GY CIL_0004GY_0002 CGP 15:68578969-68820897

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 NAS actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0015629 IBA actin cytoskeleton
GO:0016020 NAS membrane
GO:0030036 IBA actin cytoskeleton organization
GO:0051015 IBA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048043 Coro2b-001 protein_coding Mus_musculus 0 1960
ENSMUST00000164246 Coro2b-008 protein_coding Mus_musculus 0 1312
ENSMUST00000131981 Coro2b-004 protein_coding Mus_musculus 0 603
ENSMUST00000174439 Coro2b-006 protein_coding Mus_musculus 0 446
ENSMUST00000173171 Coro2b-007 protein_coding Mus_musculus 0 424
ENSMUST00000123379 Coro2b-002 retained_intron Mus_musculus 0 401
ENSMUST00000151604 Coro2b-003 retained_intron Mus_musculus 5.60519e-45 187

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