C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | LIM domain only 3 (rhombotin-like 2) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000540848  |
LMO3-001 |
ENSG00000048540 |
9606 | - |
12:16550199-16610526  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007NM | CIL_0007NM_0001 | UCNEbase | 12:16018180-18077080 |
| CIL_00098O | CIL_00098O_0001 | VISTA | 12:16157111-16759002 |
| CIL_0005FD | CIL_0005FD_0001 | CGP | 12:16188485-16609259 |
| CIL_0009BE | CIL_0009BE_0001 | VISTA | 12:16262381-16863426 |
| CIL_0005FE | CIL_0005FE_0001 | CGP | 12:16347142-16610594 |
| CIL_0008KE | CIL_0008KE_0001 | VISTA | 12:16416099-17018481 |
| CIL_0008XY | CIL_0008XY_0001 | VISTA | 12:16487774-17089388 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005737 | IDA | cytoplasm |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0006355 | IEA | regulation of transcription, DNA-templated |
| GO:0008270 | IEA | zinc ion binding |
| GO:0035360 | IDA | positive regulation of peroxisome proliferator activated receptor signaling pathway |
| GO:0045600 | IMP | positive regulation of fat cell differentiation |
| GO:0070373 | IDA | negative regulation of ERK1 and ERK2 cascade |
| GO:2000324 | IDA | positive regulation of glucocorticoid receptor signaling pathway |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000162772
|
Lmo3-001 | protein_coding | Mus_musculus | 0 | 1349 |
|
ENSMUST00000163065
|
Lmo3-004 | protein_coding | Mus_musculus | 0 | 1339 |
|
ENSMUST00000163024
|
Lmo3-002 | protein_coding | Mus_musculus | 0 | 1094 |
|
ENSMUST00000161450
|
Lmo3-007 | protein_coding | Mus_musculus | 0 | 1086 |
|
ENSMUST00000160050
|
Lmo3-008 | nonsense_mediated_decay | Mus_musculus | 0 | 1020 |
|
ENSMUST00000067437
|
Lmo3-006 | nonsense_mediated_decay | Mus_musculus | 0 | 1020 |
|
ENSMUST00000162185
|
Lmo3-005 | protein_coding | Mus_musculus | 0 | 592 |
|
ENSMUST00000162932
|
Lmo3-003 | protein_coding | Mus_musculus | 0 | 403 |
|
ENSDART00000003583
|
lmo3-001 | protein_coding | Danio_rerio | 4e-19 | 100 |
