C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000003583 lmo3-001 ENSDARG00000008720 7955 + 4:11680360-11743817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleENSDART00000003583
Transcript ID Brain Liver Muscle
ENSDART00000003583 18.986±8.01 0.025±0.00 0.409±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0003 UCNEbase 4:11486565-11823753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067437 Lmo3-006 nonsense_mediated_decay Mus_musculus 0.00000000000005 84
ENSMUST00000160050 Lmo3-008 nonsense_mediated_decay Mus_musculus 0.00000000000003 84
ENSMUST00000161450 Lmo3-007 protein_coding Mus_musculus 0.00000000000009 82
ENSMUST00000162772 Lmo3-001 protein_coding Mus_musculus 0.00000000000008 84
ENSMUST00000163024 Lmo3-002 protein_coding Mus_musculus 0.00000000000003 84
ENSMUST00000163065 Lmo3-004 protein_coding Mus_musculus 0.00000000000006 84
ENST00000261169 LMO3-201 protein_coding Homo_sapiens 9e-19 100
ENST00000320122 LMO3-014 protein_coding Homo_sapiens 9e-19 100
ENST00000335790 LMO1-001 protein_coding Homo_sapiens 0 370
ENST00000354662 LMO3-202 protein_coding Homo_sapiens 8e-19 100
ENST00000396205 LMO3-004 nonsense_mediated_decay Homo_sapiens 8e-19 100
ENST00000428101 LMO1-003 protein_coding Homo_sapiens 0 370
ENST00000441439 LMO3-003 protein_coding Homo_sapiens 8e-19 100
ENST00000447609 LMO3-010 protein_coding Homo_sapiens 8e-19 100
ENST00000453727 LMO3-012 nonsense_mediated_decay Homo_sapiens 6e-19 100
ENST00000524379 LMO1-002 retained_intron Homo_sapiens 0 318
ENST00000534484 LMO1-004 protein_coding Homo_sapiens 0 370
ENST00000534946 LMO3-020 protein_coding Homo_sapiens 2e-19 100
ENST00000535535 LMO3-013 protein_coding Homo_sapiens 3e-19 100
ENST00000537304 LMO3-011 protein_coding Homo_sapiens 4e-19 100
ENST00000540848 LMO3-001 protein_coding Homo_sapiens 4e-19 100
ENST00000541295 LMO3-203 protein_coding Homo_sapiens 8e-19 100
ENST00000541589 LMO3-006 nonsense_mediated_decay Homo_sapiens 3e-19 100
ENST00000541764 LMO3-009 nonsense_mediated_decay Homo_sapiens 3e-19 100
ENST00000616247 LMO3-204 protein_coding Homo_sapiens 7e-19 100

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