C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540992 RP11-424M22.1-001 ENSG00000256450 9606 + 12:16513445-16514371 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungOvaryENST00000540992
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Ovary
ENST00000540992 0.190±0.00 0.172±0.00 0.057±0.00 0.706±0.00 0.033±0.00 0.120±0.00 0.828±0.00 0.363±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0001 UCNEbase 12:16018180-18077080
CIL_00098O CIL_00098O_0001 VISTA 12:16157111-16759002
CIL_0005FD CIL_0005FD_0001 CGP 12:16188485-16609259
CIL_0009BE CIL_0009BE_0001 VISTA 12:16262381-16863426
CIL_0005FE CIL_0005FE_0001 CGP 12:16347142-16610594
CIL_0008KE CIL_0008KE_0001 VISTA 12:16416099-17018481
CIL_0008XY CIL_0008XY_0001 VISTA 12:16487774-17089388

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121655 Got2-ps1-001 processed_pseudogene Mus_musculus 0 769
ENSMUST00000034097 Got2-001 protein_coding Mus_musculus 0 752
ENSMUST00000100526 Gm10874-201 protein_coding Mus_musculus 0 638

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