C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin associated protein), alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075340 Ctnna2-201 ENSMUSG00000063063 10090 - 6:76882550-77979560 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075340 0.016±0.00 0.142±0.00 0.027±0.00 27.501±0.00 0.046±0.03 0.117±0.04 0.038±0.00 0.056±0.03 0.014±0.00 0.011±0.00 0.805±0.65 0.037±0.00 0.576±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0002 CGP 6:76881637-77979699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005737 ISS cytoplasm
GO:0005912 IDA adherens junction
GO:0005913 IDA cell-cell adherens junction
GO:0007409 IMP axonogenesis
GO:0015629 IEA actin cytoskeleton
GO:0016323 IDA basolateral plasma membrane
GO:0016337 ISS single organismal cell-cell adhesion
GO:0021942 IMP radial glia guided migration of Purkinje cell
GO:0030027 IDA lamellipodium
GO:0030424 IMP axon
GO:0045296 IEA cadherin binding
GO:0048813 IMP dendrite morphogenesis
GO:0048854 IMP brain morphogenesis
GO:0051823 IMP regulation of synapse structural plasticity
GO:0060134 IMP prepulse inhibition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000101306 ctnna2-002 protein_coding Danio_rerio 0 1688
ENSDART00000052441 ctnna1-001 protein_coding Danio_rerio 0 1179
ENSDART00000153506 ctnna2-202 protein_coding Danio_rerio 0 1155
ENST00000302763 CTNNA1-001 protein_coding Homo_sapiens 0 1131
ENST00000343114 CTNNA2-004 protein_coding Homo_sapiens 0 2266
ENST00000361291 CTNNA2-201 protein_coding Homo_sapiens 0 1851
ENST00000373735 CTNNA3-005 processed_transcript Homo_sapiens 0 248
ENST00000402739 CTNNA2-003 protein_coding Homo_sapiens 0 3162
ENST00000409266 CTNNA2-005 protein_coding Homo_sapiens 3e-34 148
ENST00000409550 CTNNA2-015 protein_coding Homo_sapiens 0 701
ENST00000409971 CTNNA2-007 protein_coding Homo_sapiens 0 501
ENST00000433211 CTNNA3-001 protein_coding Homo_sapiens 0 248
ENST00000451966 CTNNA2-006 protein_coding Homo_sapiens 0 289
ENST00000465616 CTNNA2-009 processed_transcript Homo_sapiens 0 634
ENST00000466387 CTNNA2-002 protein_coding Homo_sapiens 0 3579
ENST00000467892 CTNNA2-010 retained_intron Homo_sapiens 0 568
ENST00000493024 CTNNA2-014 processed_transcript Homo_sapiens 0 553
ENST00000496558 CTNNA2-001 protein_coding Homo_sapiens 0 3709
ENST00000508970 CTNNA2-020 processed_transcript Homo_sapiens 0 287
ENST00000515849 CTNNAP1-001 processed_pseudogene Homo_sapiens 0 610
ENST00000517533 CTNNA1-027 protein_coding Homo_sapiens 0 228
ENST00000517534 CTNNA1-020 retained_intron Homo_sapiens 0 219
ENST00000517904 CTNNA1-042 retained_intron Homo_sapiens 0 200
ENST00000518381 CTNNA1-038 protein_coding Homo_sapiens 0 196
ENST00000518825 CTNNA1-006 protein_coding Homo_sapiens 0 1027
ENST00000519116 CTNNA1-028 protein_coding Homo_sapiens 0 200
ENST00000520400 CTNNA1-021 processed_transcript Homo_sapiens 0 228
ENST00000521387 CTNNA1-039 retained_intron Homo_sapiens 0 538
ENST00000521683 CTNNA1-036 protein_coding Homo_sapiens 0 189
ENST00000521724 CTNNA1-003 nonsense_mediated_decay Homo_sapiens 0 1131
ENST00000522013 CTNNA1-023 protein_coding Homo_sapiens 0 217
ENST00000522052 CTNNA1-043 nonsense_mediated_decay Homo_sapiens 3e-36 156
ENST00000523298 CTNNA1-030 protein_coding Homo_sapiens 0 217
ENST00000523685 CTNNA1-025 protein_coding Homo_sapiens 0 259
ENST00000540387 CTNNA1-201 protein_coding Homo_sapiens 0 1000
ENST00000540488 CTNNA2-202 protein_coding Homo_sapiens 0 1663
ENST00000541047 CTNNA2-203 protein_coding Homo_sapiens 0 2266

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