C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541713 PTPN1-201 ENSG00000196396 9606 + 20:50510321-50584760 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000541713
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000541713 9.618±0.00 11.960±0.00 7.211±0.00 6.569±0.00 5.736±0.00 5.120±4.19 23.222±0.00 4.618±0.00 15.616±0.00 3.003±2.28 6.631±2.50 12.339±4.96 6.766±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZW CIL_0007ZW_0001 VISTA 20:50090256-50696209
CIL_0007H3 CIL_0007H3_0001 CGP 20:50190734-50585241
CIL_0007VZ CIL_0007VZ_0001 VISTA 20:50389770-50992625
CIL_0007GS CIL_0007GS_0001 CGP 20:50510321-50691528

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005783 IDA endoplasmic reticulum
GO:0006470 IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126839 Ptpn1-002 processed_transcript Mus_musculus 0 957
ENSMUST00000029053 Ptpn1-001 protein_coding Mus_musculus 0 957

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