C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007H3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172216-ENSG00000196396 CGP 9606 20:50190734-50585241
GeneTranscriptPositionBiotype
ENSG00000172216 (CEBPB)
CCAAT/enhancer binding protein (C/EBP), beta 		ENST00000303004 (CEBPB-001) 50190734-50192689 protein_coding
ENSG00000196396 (PTPN1)
protein tyrosine phosphatase, non-receptor type 1 		ENST00000371621 (PTPN1-001) 50510354-50585241 protein_coding
ENST00000541713 (PTPN1-201) 50510321-50584760 protein_coding
ENSG00000201501 (Y_RNA)
Y RNA 		ENST00000364631 (Y_RNA.1-463) 50563009-50563110 misc_RNA
ENSG00000203999 (LINC01270)
long intergenic non-protein coding RNA 1270 		ENST00000371639 (LINC01270-001) 50292720-50314922 lincRNA
ENST00000457853 (LINC01270-002) 50310974-50312014 lincRNA
ENSG00000224397 (LINC01272)
long intergenic non-protein coding RNA 1272 		ENST00000421019 (LINC01272-004) 50277534-50278415 lincRNA
ENST00000422459 (LINC01272-003) 50276317-50279037 lincRNA
ENST00000425497 (LINC01272-001) 50267486-50279795 lincRNA
ENST00000445003 (LINC01272-002) 50267499-50278427 lincRNA
ENST00000622604 (LINC01272-201) 50275670-50279795 lincRNA
ENSG00000231715 (COX6CP2)
cytochrome c oxidase subunit VIc pseudogene 2 		ENST00000444980 (COX6CP2-001) 50479767-50479991 processed_pseudogene
ENSG00000232043 (RP4-530I15.9)
 ENST00000431019 (RP4-530I15.9-001) 50570975-50578041 antisense
ENSG00000233077 (LINC01271)
long intergenic non-protein coding RNA 1271 		ENST00000441214 (LINC01271-001) 50310711-50321342 lincRNA
ENSG00000239742 (RN7SL672P)
RNA, 7SL, cytoplasmic 672, pseudogene 		ENST00000474091 (RN7SL672P-201) 50557682-50557998 misc_RNA
ENSG00000244376 (RN7SL636P)
RNA, 7SL, cytoplasmic 636, pseudogene 		ENST00000497504 (RN7SL636P-201) 50429190-50429483 misc_RNA
ENSG00000277449 (CEBPB-AS1)
CEBPB antisense RNA 1 		ENST00000613921 (CEBPB-AS1-001) 50184598-50191498 antisense
CIL_0007H3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056501-ENSMUSG00000027540 CGP 10090 2:167688915-167979385
GeneTranscriptPositionBiotype
ENSMUSG00000006462 (A530013C23Rik)
RIKEN cDNA A530013C23 gene 		ENSMUST00000130679 (A530013C23Rik-002) 167691181-167697801 lincRNA
ENSMUST00000141923 (A530013C23Rik-001) 167691177-167729172 lincRNA
ENSMUSG00000027540 (Ptpn1)
protein tyrosine phosphatase, non-receptor type 1 		ENSMUST00000029053 (Ptpn1-001) 167932327-167979385 protein_coding
ENSMUST00000124039 (Ptpn1-003) 167932395-167967733 processed_transcript
ENSMUST00000126839 (Ptpn1-002) 167932372-167979385 processed_transcript
ENSMUST00000142717 (Ptpn1-005) 167951048-167965067 processed_transcript
ENSMUST00000144249 (Ptpn1-004) 167932395-167963687 processed_transcript
ENSMUST00000147210 (Ptpn1-006) 167932057-167974737 processed_transcript
ENSMUST00000151705 (Ptpn1-007) 167932372-167967785 processed_transcript
ENSMUSG00000056501 (Cebpb)
CCAAT/enhancer binding protein (C/EBP), beta 		ENSMUST00000070642 (Cebpb-001) 167688915-167690418 protein_coding
ENSMUSG00000084797 (Gm14321)
predicted gene 14321 		ENSMUST00000127441 (Gm14321-002) 167777536-167782126 lincRNA
ENSMUST00000139927 (Gm14321-001) 167777467-167782569 lincRNA
ENSMUSG00000085411 (Gm14319)
predicted gene 14319 		ENSMUST00000142937 (Gm14319-001) 167858585-167862542 lincRNA
ENSMUSG00000087624 (9230111E07Rik)
RIKEN cDNA 9230111E07 gene 		ENSMUST00000124850 (9230111E07Rik-001) 167782053-167783486 lincRNA
ENSMUSG00000087684 (1200007C13Rik)
RIKEN cDNA 1200007C13 gene 		ENSMUST00000143649 (1200007C13Rik-001) 167827693-167833646 lincRNA
ENSMUSG00000090213 (Tmem189)
transmembrane protein 189 		ENSMUST00000006587 (Tmem189-001) 167642608-167661556 protein_coding
ENSMUST00000125874 (Tmem189-003) 167654185-167661554 retained_intron
ENSMUST00000142148 (Tmem189-004) 167643736-167645177 retained_intron
ENSMUST00000148262 (Tmem189-002) 167643228-167689822 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007H3_0001ENSG00000172216ENST00000303004ENSG00000196396ENST00000371621ENST00000541713ENSG00000201501ENST00000364631ENSG00000203999ENST00000371639ENST00000457853ENSG00000224397ENST00000421019ENST00000422459ENST00000425497ENST00000445003ENST00000622604ENSG00000231715ENST00000444980ENSG00000232043ENST00000431019ENSG00000233077ENST00000441214ENSG00000239742ENST00000474091ENSG00000244376ENST00000497504ENSG00000277449ENST00000613921CIL_0007H3_0002ENSMUSG00000006462ENSMUST00000130679ENSMUST00000141923ENSMUSG00000027540ENSMUST00000029053ENSMUST00000124039ENSMUST00000126839ENSMUST00000142717ENSMUST00000144249ENSMUST00000147210ENSMUST00000151705ENSMUSG00000056501ENSMUST00000070642ENSMUSG00000084797ENSMUST00000127441ENSMUST00000139927ENSMUSG00000085411ENSMUST00000142937ENSMUSG00000087624ENSMUST00000124850ENSMUSG00000087684ENSMUST00000143649ENSMUSG00000090213ENSMUST00000006587ENSMUST00000125874ENSMUST00000142148ENSMUST00000148262
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007H3_0001ENSG00000172216ENST00000303004ENSG00000196396ENST00000371621ENST00000541713ENSG00000201501ENST00000364631ENSG00000203999ENST00000371639ENST00000457853ENSG00000224397ENST00000421019ENST00000422459ENST00000425497ENST00000445003ENST00000622604ENSG00000231715ENST00000444980ENSG00000232043ENST00000431019ENSG00000233077ENST00000441214ENSG00000239742ENST00000474091ENSG00000244376ENST00000497504ENSG00000277449ENST00000613921CIL_0007H3_0002ENSMUSG00000006462ENSMUST00000130679ENSMUST00000141923ENSMUSG00000027540ENSMUST00000029053ENSMUST00000126839ENSMUST00000147210ENSMUST00000151705ENSMUSG00000056501ENSMUST00000070642ENSMUSG00000084797ENSMUST00000127441ENSMUST00000139927ENSMUSG00000085411ENSMUST00000142937ENSMUSG00000087624ENSMUST00000124850ENSMUSG00000087684ENSMUST00000143649ENSMUSG00000090213ENSMUST00000006587ENSMUST00000142148ENSMUST00000148262
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000172216 ENST00000303004 70.605±0.00 28.999±0.00 0.986±0.00 N/A 5.975±0.00 52.426±0.00 38.960±0.00 34.205±22.73 42.899±37.75 99.147±92.55 114.923±103.82 51.478±32.17 136.782±8.23 8.920±0.00
ENSG00000196396 ENST00000371621 3.510±0.00 3.835±0.00 N/A 1.717±0.39 2.988±1.44 2.988±1.76 2.617±0.00 1.675±0.00 1.840±0.78 3.926±0.00 0.684±0.11 3.753±1.76 4.799±1.42 2.256±0.08
ENST00000541713 9.618±0.00 11.960±0.00 N/A 7.211±0.00 6.569±0.00 5.736±0.00 5.120±4.19 23.222±0.00 4.618±0.00 15.616±0.00 3.003±2.28 6.631±2.50 12.339±4.96 6.766±1.50
ENSG00000201501 ENST00000364631 N/A 0.744±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000203999 ENST00000371639 0.093±0.00 0.142±0.00 N/A 0.037±0.00 0.105±0.02 0.066±0.05 0.026±0.00 0.145±0.08 0.301±0.14 N/A 0.151±0.00 0.215±0.06 0.095±0.03 0.199±0.00
ENST00000457853 N/A N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000224397 ENST00000421019 N/A N/A N/A N/A N/A N/A N/A 0.611±0.00 N/A N/A N/A N/A N/A N/A
ENST00000422459 N/A N/A 0.080±0.00 N/A N/A N/A N/A 0.355±0.00 1.376±0.00 3.715±0.66 N/A 0.486±0.06 0.827±0.41 N/A
ENST00000425497 1.362±0.00 0.460±0.00 N/A N/A 0.786±0.00 0.446±0.00 0.155±0.00 0.688±0.00 N/A 1.501±0.00 N/A 1.137±0.70 0.953±0.28 0.281±0.00
ENST00000445003 4.539±0.00 0.843±0.00 N/A N/A 2.473±0.00 0.728±0.00 0.704±0.00 N/A N/A 22.371±0.00 0.569±0.00 0.541±0.00 2.689±0.03 0.302±0.00
ENST00000622604 N/A N/A N/A N/A N/A N/A 0.350±0.00 0.690±0.00 N/A N/A N/A 0.244±0.00 N/A 0.040±0.00
ENSG00000231715 ENST00000444980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.229±0.02 N/A N/A
ENSG00000232043 ENST00000431019 N/A N/A 0.520±0.00 0.182±0.00 1.057±0.00 0.499±0.00 N/A 0.323±0.00 0.455±0.00 N/A 0.191±0.00 0.902±0.00 N/A N/A
ENSG00000233077 ENST00000441214 0.104±0.00 0.142±0.00 N/A 0.068±0.00 0.372±0.16 0.081±0.00 0.120±0.05 0.427±0.41 0.232±0.02 0.526±0.00 0.102±0.00 0.515±0.34 0.150±0.06 0.459±0.36
ENSG00000239742 ENST00000474091 N/A 0.152±0.00 N/A N/A N/A 0.807±0.00 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000244376 ENST00000497504 0.419±0.00 0.447±0.00 N/A 0.756±0.00 0.554±0.00 0.072±0.00 N/A 0.156±0.00 N/A 0.595±0.00 N/A 1.229±0.00 N/A 0.069±0.00
ENSG00000277449 ENST00000613921 N/A N/A 0.076±0.00 0.623±0.41 N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006462 ENSMUST00000130679 0.489±0.29 0.471±0.14 0.186±0.01 0.007±0.00 0.374±0.21 0.029±0.01 0.284±0.05 0.060±0.01 0.041±0.03 0.346±0.01 0.685±0.31 0.110±0.06 0.055±0.06 0.026±0.01
ENSMUST00000141923 0.049±0.01 0.058±0.00 N/A N/A N/A 0.024±0.01 N/A 0.008±0.00 N/A N/A N/A 0.022±0.02 0.022±0.02 0.037±0.03
ENSMUSG00000027540 ENSMUST00000029053 16.230±4.47 30.719±0.47 16.318±1.17 14.698±9.54 35.090±18.05 15.922±6.89 5.444±1.33 9.228±4.30 8.928±1.74 32.640±4.55 5.443±0.79 29.051±14.17 6.118±3.18 11.586±5.80
ENSMUST00000124039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126839 N/A N/A N/A 1.538±0.00 N/A N/A N/A 1.355±0.00 1.013±0.00 N/A N/A N/A 1.501±0.07 0.348±0.00
ENSMUST00000142717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.432±0.00 5.172±1.49 N/A
ENSMUST00000151705 N/A N/A N/A 18.430±0.00 N/A N/A N/A N/A N/A N/A N/A 40.579±0.00 21.456±0.91 27.383±0.00
ENSMUSG00000056501 ENSMUST00000070642 77.953±12.64 648.892±132.21 57.335±12.43 N/A 123.757±39.64 55.476±6.46 30.419±11.30 59.313±0.00 51.287±19.04 158.914±45.32 33.377±7.80 274.296±40.37 142.999±73.14 N/A
ENSMUSG00000084797 ENSMUST00000127441 N/A N/A N/A N/A N/A N/A N/A N/A 0.245±0.01 N/A 0.176±0.06 N/A N/A N/A
ENSMUST00000139927 N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A 0.470±0.18 N/A N/A N/A
ENSMUSG00000085411 ENSMUST00000142937 0.131±0.07 N/A N/A 0.029±0.02 0.126±0.00 N/A 0.133±0.07 0.095±0.03 0.111±0.06 0.700±0.00 N/A 0.295±0.08 0.443±0.34 0.091±0.04
ENSMUSG00000087624 ENSMUST00000124850 N/A N/A N/A 1.135±0.00 0.787±0.00 N/A 0.409±0.00 N/A 0.397±0.11 N/A 0.321±0.11 1.773±0.00 1.132±0.40 3.676±0.00
ENSMUSG00000087684 ENSMUST00000143649 0.056±0.03 0.101±0.03 0.044±0.01 0.003±0.00 0.137±0.04 0.035±0.01 0.063±0.02 0.046±0.01 0.032±0.02 0.439±0.02 0.022±0.01 0.074±0.06 0.212±0.23 0.066±0.02
ENSMUSG00000090213 ENSMUST00000006587 46.600±11.65 N/A 18.425±2.89 11.923±1.27 56.425±28.48 78.183±18.09 14.511±2.61 145.198±29.00 13.094±2.52 59.198±16.88 10.052±2.81 43.829±22.08 34.625±9.67 40.055±6.15
ENSMUST00000125874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.354±0.00
ENSMUST00000148262 27.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.772±0.00 13.376±0.00

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