C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007GS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196396-ENSG00000042062 CGP 9606 20:50510321-50691528
GeneTranscriptPositionBiotype
ENSG00000042062 (FAM65C)
family with sequence similarity 65, member C 		ENST00000045083 (FAM65C-201) 50586112-50636889 protein_coding
ENST00000327979 (FAM65C-004) 50586108-50691528 protein_coding
ENST00000462493 (FAM65C-001) 50596978-50636889 retained_intron
ENST00000462842 (FAM65C-005) 50586665-50590012 processed_transcript
ENST00000482129 (FAM65C-003) 50592538-50595192 processed_transcript
ENST00000488529 (FAM65C-002) 50589717-50597609 processed_transcript
ENSG00000196396 (PTPN1)
protein tyrosine phosphatase, non-receptor type 1 		ENST00000371621 (PTPN1-001) 50510354-50585241 protein_coding
ENST00000541713 (PTPN1-201) 50510321-50584760 protein_coding
ENSG00000201501 (Y_RNA)
Y RNA 		ENST00000364631 (Y_RNA.1-463) 50563009-50563110 misc_RNA
ENSG00000208018 (MIR645)
microRNA 645 		ENST00000385283 (MIR645-201) 50585786-50585879 miRNA
ENSG00000221091 (MIR1302-5)
microRNA 1302-5 		ENST00000408164 (MIR1302-5-201) 50614636-50614785 miRNA
ENSG00000231302 (RPL36P2)
ribosomal protein L36 pseudogene 2 		ENST00000426026 (RPL36P2-001) 50620763-50621077 processed_pseudogene
ENSG00000232043 (RP4-530I15.9)
 ENST00000431019 (RP4-530I15.9-001) 50570975-50578041 antisense
ENSG00000234693 (RP4-530I15.6)
 ENST00000435177 (RP4-530I15.6-002) 50653202-50662275 antisense
ENST00000452336 (RP4-530I15.6-001) 50645471-50660291 antisense
ENSG00000239742 (RN7SL672P)
RNA, 7SL, cytoplasmic 672, pseudogene 		ENST00000474091 (RN7SL672P-201) 50557682-50557998 misc_RNA
ENSG00000278453 (AL133230.1)
 ENST00000613599 (AL133230.1-201) 50622189-50622299 miRNA
CIL_0007GS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027540-ENSMUSG00000074577 CGP 10090 2:167932057-168010618
GeneTranscriptPositionBiotype
ENSMUSG00000027540 (Ptpn1)
protein tyrosine phosphatase, non-receptor type 1 		ENSMUST00000029053 (Ptpn1-001) 167932327-167979385 protein_coding
ENSMUST00000124039 (Ptpn1-003) 167932395-167967733 processed_transcript
ENSMUST00000126839 (Ptpn1-002) 167932372-167979385 processed_transcript
ENSMUST00000142717 (Ptpn1-005) 167951048-167965067 processed_transcript
ENSMUST00000144249 (Ptpn1-004) 167932395-167963687 processed_transcript
ENSMUST00000147210 (Ptpn1-006) 167932057-167974737 processed_transcript
ENSMUST00000151705 (Ptpn1-007) 167932372-167967785 processed_transcript
ENSMUSG00000074577 (Fam65c)
family with sequence similarity 65, member C 		ENSMUST00000099073 (Fam65c-002) 167980166-168010618 protein_coding
ENSMUST00000123782 (Fam65c-001) 167980164-168010618 processed_transcript
ENSMUST00000131572 (Fam65c-003) 167985058-167986755 retained_intron
ENSMUST00000142702 (Fam65c-004) 167988802-167991347 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GS_0001ENSG00000042062ENST00000045083ENST00000327979ENST00000462493ENST00000462842ENST00000482129ENST00000488529ENSG00000196396ENST00000371621ENST00000541713ENSG00000201501ENST00000364631ENSG00000208018ENST00000385283ENSG00000221091ENST00000408164ENSG00000231302ENST00000426026ENSG00000232043ENST00000431019ENSG00000234693ENST00000435177ENST00000452336ENSG00000239742ENST00000474091ENSG00000278453ENST00000613599CIL_0007GS_0002ENSMUSG00000027540ENSMUST00000029053ENSMUST00000124039ENSMUST00000126839ENSMUST00000142717ENSMUST00000144249ENSMUST00000147210ENSMUST00000151705ENSMUSG00000074577ENSMUST00000099073ENSMUST00000123782ENSMUST00000131572ENSMUST00000142702
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GS_0001ENSG00000042062ENST00000045083ENST00000327979ENST00000462493ENST00000462842ENST00000482129ENST00000488529ENSG00000196396ENST00000371621ENST00000541713ENSG00000201501ENST00000364631ENSG00000208018ENST00000385283ENSG00000221091ENST00000408164ENSG00000231302ENST00000426026ENSG00000232043ENST00000431019ENSG00000234693ENST00000435177ENST00000452336ENSG00000239742ENST00000474091ENSG00000278453ENST00000613599CIL_0007GS_0002ENSMUSG00000027540ENSMUST00000029053ENSMUST00000126839ENSMUST00000147210ENSMUST00000151705ENSMUSG00000074577ENSMUST00000099073ENSMUST00000123782ENSMUST00000131572ENSMUST00000142702
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000042062 ENST00000045083 N/A N/A N/A N/A N/A N/A N/A 0.921±0.00 N/A N/A 0.267±0.00 N/A 0.812±0.00 N/A
ENST00000327979 3.295±0.00 3.404±0.00 0.323±0.00 0.094±0.00 0.547±0.18 1.743±0.00 2.133±0.00 1.695±0.68 0.906±0.00 0.438±0.09 0.158±0.00 1.336±0.52 0.189±0.00 0.549±0.00
ENST00000462493 N/A N/A N/A 0.168±0.00 N/A N/A 0.129±0.00 N/A 0.058±0.00 0.337±0.00 N/A N/A 0.203±0.04 N/A
ENST00000462842 N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A
ENST00000482129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.765±0.00 0.399±0.00 N/A
ENST00000488529 N/A N/A N/A N/A N/A N/A 0.384±0.00 N/A N/A N/A 0.442±0.00 N/A N/A N/A
ENSG00000196396 ENST00000371621 3.510±0.00 3.835±0.00 N/A 1.717±0.39 2.988±1.44 2.988±1.76 2.617±0.00 1.675±0.00 1.840±0.78 3.926±0.00 0.684±0.11 3.753±1.76 4.799±1.42 2.256±0.08
ENST00000541713 9.618±0.00 11.960±0.00 N/A 7.211±0.00 6.569±0.00 5.736±0.00 5.120±4.19 23.222±0.00 4.618±0.00 15.616±0.00 3.003±2.28 6.631±2.50 12.339±4.96 6.766±1.50
ENSG00000201501 ENST00000364631 N/A 0.744±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000208018 ENST00000385283 N/A N/A N/A N/A N/A N/A 0.732±0.00 N/A N/A 1.496±0.00 N/A N/A N/A N/A
ENSG00000221091 ENST00000408164 N/A 0.154±0.00 N/A N/A N/A N/A 0.298±0.00 0.575±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000231302 ENST00000426026 0.067±0.00 0.654±0.00 N/A N/A N/A N/A N/A 0.154±0.00 N/A 0.077±0.00 N/A N/A N/A 0.140±0.00
ENSG00000232043 ENST00000431019 N/A N/A 0.520±0.00 0.182±0.00 1.057±0.00 0.499±0.00 N/A 0.323±0.00 0.455±0.00 N/A 0.191±0.00 0.902±0.00 N/A N/A
ENSG00000234693 ENST00000435177 N/A N/A N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A N/A N/A 0.076±0.00 0.082±0.00
ENST00000452336 0.107±0.00 0.489±0.00 N/A N/A 0.030±0.00 N/A 0.186±0.00 N/A 0.078±0.00 N/A N/A N/A 0.080±0.03 N/A
ENSG00000239742 ENST00000474091 N/A 0.152±0.00 N/A N/A N/A 0.807±0.00 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000278453 ENST00000613599 0.899±0.00 0.731±0.00 N/A 0.270±0.00 N/A N/A 0.686±0.00 0.253±0.00 0.457±0.00 0.506±0.00 N/A 15.701±0.00 N/A 0.448±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027540 ENSMUST00000029053 16.230±4.47 30.719±0.47 16.318±1.17 14.698±9.54 35.090±18.05 15.922±6.89 5.444±1.33 9.228±4.30 8.928±1.74 32.640±4.55 5.443±0.79 29.051±14.17 6.118±3.18 11.586±5.80
ENSMUST00000124039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126839 N/A N/A N/A 1.538±0.00 N/A N/A N/A 1.355±0.00 1.013±0.00 N/A N/A N/A 1.501±0.07 0.348±0.00
ENSMUST00000142717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.432±0.00 5.172±1.49 N/A
ENSMUST00000151705 N/A N/A N/A 18.430±0.00 N/A N/A N/A N/A N/A N/A N/A 40.579±0.00 21.456±0.91 27.383±0.00
ENSMUSG00000074577 ENSMUST00000099073 0.728±0.44 0.241±0.00 1.595±0.60 0.165±0.00 1.920±0.50 0.678±0.37 0.195±0.09 1.979±0.63 0.608±0.34 0.198±0.05 0.023±0.00 0.613±0.24 1.337±1.41 0.082±0.01
ENSMUST00000123782 N/A 0.164±0.00 N/A 0.103±0.00 N/A N/A 0.317±0.00 N/A N/A N/A 0.122±0.09 N/A 0.464±0.00 0.067±0.06
ENSMUST00000131572 N/A 0.966±0.09 N/A N/A N/A N/A N/A N/A N/A N/A 0.662±0.00 N/A N/A 0.179±0.04
ENSMUST00000142702 N/A 0.535±0.01 2.028±0.00 N/A 2.137±0.09 0.584±0.07 0.235±0.00 N/A N/A 1.348±0.00 N/A N/A N/A N/A

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