C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: voltage-dependent anion channel 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543351 VDAC2-201 ENSG00000165637 9606 + 10:75210154-75231444 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaENST00000543351
Transcript ID Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000543351 4.603±0.00 17.765±0.00 5.703±0.00 10.319±0.00 10.589±0.00 4.308±0.00 25.363±0.00 8.709±3.31 6.744±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0001 UCNEbase 10:74418410-76978156
CIL_0008UO CIL_0008UO_0001 VISTA 10:74941035-75542526
CIL_000925 CIL_000925_0001 VISTA 10:74961440-75563087
CIL_00084B CIL_00084B_0001 VISTA 10:75078488-75679926
CIL_0007IK CIL_0007IK_0001 CGP 10:75099586-75231448
CIL_0008K8 CIL_0008K8_0001 VISTA 10:75104806-75705881
CIL_0007IL CIL_0007IL_0001 CGP 10:75210154-75236030

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0006820 IEA anion transport
GO:0008308 IEA:TAS voltage-gated anion channel activity
GO:0015288 IEA porin activity
GO:0042645 IDA mitochondrial nucleoid
GO:0044070 IEA regulation of anion transport
GO:0046930 IEA pore complex
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022293 Vdac2-001 protein_coding Mus_musculus 0 1611
ENSMUST00000172727 Vdac2-009 protein_coding Mus_musculus 0 1230
ENSMUST00000173456 Vdac2-008 protein_coding Mus_musculus 0 1230
ENSMUST00000153320 Vdac2-002 protein_coding Mus_musculus 0 806
ENSMUST00000132364 Vdac2-005 retained_intron Mus_musculus 0 628
ENSMUST00000130224 Vdac2-006 retained_intron Mus_musculus 0 520
ENSMUST00000142084 Vdac2-007 retained_intron Mus_musculus 0 494
ENSMUST00000147715 Vdac2-004 processed_transcript Mus_musculus 0 305
ENSMUST00000152562 Vdac2-003 protein_coding Mus_musculus 0 243

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