C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: voltage-dependent anion channel 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153320 Vdac2-002 ENSMUSG00000021771 10090 + 14:21831271-21840435 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonHeartKidneyLiverPlacentaTestisENSMUST00000153320
Transcript ID Adipose Adrenal Bladder Colon Heart Kidney Liver Placenta Testis
ENSMUST00000153320 25.149±1.40 102.499±0.00 41.807±0.00 67.645±9.27 46.452±0.48 38.080±0.00 40.417±9.08 50.800±0.00 91.453±4.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0002 UCNEbase 14:21252402-23394598
CIL_0008UO CIL_0008UO_0002 VISTA 14:21553194-22153685
CIL_000925 CIL_000925_0002 VISTA 14:21565849-22167377
CIL_00084B CIL_00084B_0002 VISTA 14:21666827-22268239
CIL_0008K8 CIL_0008K8_0002 VISTA 14:21690858-22291990
CIL_0007IK CIL_0007IK_0002 CGP 14:21750531-21845879
CIL_0008KK CIL_0008KK_0002 VISTA 14:21813215-22415951
CIL_0007IL CIL_0007IL_0002 CGP 14:21831269-21848977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0005743 IDA mitochondrial inner membrane
GO:0006820 IEA anion transport
GO:0008308 IEA voltage-gated anion channel activity
GO:0044070 IEA regulation of anion transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298468 VDAC2-003 protein_coding Homo_sapiens 0 806
ENST00000313132 VDAC2-002 protein_coding Homo_sapiens 0 806
ENST00000332211 VDAC2-001 protein_coding Homo_sapiens 0 846
ENST00000344036 VDAC2-005 protein_coding Homo_sapiens 0 785
ENST00000413289 VDAC2-013 protein_coding Homo_sapiens 0 337
ENST00000430995 AL365331.2-001 processed_pseudogene Homo_sapiens 0 405
ENST00000447677 VDAC2-010 protein_coding Homo_sapiens 0 806
ENST00000467568 AC007318.5-001 processed_pseudogene Homo_sapiens 0 785
ENST00000468285 VDAC2-009 processed_transcript Homo_sapiens 0 643
ENST00000472137 VDAC2-006 processed_transcript Homo_sapiens 0 664
ENST00000475142 VDAC2-011 retained_intron Homo_sapiens 0 263
ENST00000481876 VDAC2-007 retained_intron Homo_sapiens 0 429
ENST00000498394 VDAC2-008 processed_transcript Homo_sapiens 0 647
ENST00000543351 VDAC2-201 protein_coding Homo_sapiens 0 806
ENST00000544463 RP11-436I9.3-001 processed_pseudogene Homo_sapiens 0 503

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