C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: voltage-dependent anion channel 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022293 Vdac2-001 ENSMUSG00000021771 10090 + 14:21831269-21845879 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022293
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022293 35.768±20.29 245.841±22.48 58.094±1.55 58.349±5.87 41.578±26.84 133.683±10.78 83.966±16.82 60.850±22.60 35.745±15.31 61.867±22.25 77.276±5.40 82.297±38.32 68.432±33.32 200.708±21.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0002 UCNEbase 14:21252402-23394598
CIL_0008UO CIL_0008UO_0002 VISTA 14:21553194-22153685
CIL_000925 CIL_000925_0002 VISTA 14:21565849-22167377
CIL_00084B CIL_00084B_0002 VISTA 14:21666827-22268239
CIL_0008K8 CIL_0008K8_0002 VISTA 14:21690858-22291990
CIL_0007IK CIL_0007IK_0002 CGP 14:21750531-21845879
CIL_0008KK CIL_0008KK_0002 VISTA 14:21813215-22415951
CIL_0007IL CIL_0007IL_0002 CGP 14:21831269-21848977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0005743 IDA mitochondrial inner membrane
GO:0006820 IEA anion transport
GO:0008308 IEA voltage-gated anion channel activity
GO:0015288 IEA porin activity
GO:0032272 IMP negative regulation of protein polymerization
GO:0042645 IEA mitochondrial nucleoid
GO:0044070 IEA regulation of anion transport
GO:0046930 IEA pore complex
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome
GO:2001243 IMP negative regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298468 VDAC2-003 protein_coding Homo_sapiens 0 1188
ENST00000313132 VDAC2-002 protein_coding Homo_sapiens 0 1507
ENST00000332211 VDAC2-001 protein_coding Homo_sapiens 0 1755
ENST00000344036 VDAC2-005 protein_coding Homo_sapiens 0 785
ENST00000413289 VDAC2-013 protein_coding Homo_sapiens 0 337
ENST00000430995 AL365331.2-001 processed_pseudogene Homo_sapiens 0 684
ENST00000447677 VDAC2-010 protein_coding Homo_sapiens 0 828
ENST00000460044 VDAC2-004 retained_intron Homo_sapiens 0 492
ENST00000467568 AC007318.5-001 processed_pseudogene Homo_sapiens 0 1212
ENST00000468285 VDAC2-009 processed_transcript Homo_sapiens 0 643
ENST00000470745 VDAC2-012 retained_intron Homo_sapiens 0 233
ENST00000472137 VDAC2-006 processed_transcript Homo_sapiens 0 682
ENST00000475142 VDAC2-011 retained_intron Homo_sapiens 0 263
ENST00000481876 VDAC2-007 retained_intron Homo_sapiens 0 440
ENST00000498394 VDAC2-008 processed_transcript Homo_sapiens 0 647
ENST00000543351 VDAC2-201 protein_coding Homo_sapiens 0 1611
ENST00000544463 RP11-436I9.3-001 processed_pseudogene Homo_sapiens 0 708

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