C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MYC binding protein 2, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544440 MYCBP2-001 ENSG00000005810 9606 - 13:77044655-77326679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000544440
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000544440 3.559±0.00 1.702±0.00 3.586±0.00 5.970±2.37 4.357±2.71 1.560±0.00 0.906±0.34 4.270±3.92 0.573±0.00 1.694±1.11 0.986±0.38 2.003±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004B CIL_00004B_0001 CGP 13:76992598-77327050
CIL_0004PP CIL_0004PP_0002 CGP 13:77044655-77645263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008045 IEA motor neuron axon guidance
GO:0008270 IEA zinc ion binding
GO:0015630 IEA microtubule cytoskeleton
GO:0016020 IDA membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0021785 IEA branchiomotor neuron axon guidance
GO:0021952 IEA central nervous system projection neuron axonogenesis
GO:0030424 IEA axon
GO:0032880 IEA regulation of protein localization
GO:0042177 IEA negative regulation of protein catabolic process
GO:0042803 IEA protein homodimerization activity
GO:0048667 IEA cell morphogenesis involved in neuron differentiation
GO:0051493 IEA regulation of cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160758 Mycbp2-006 protein_coding Mus_musculus 0 18780
ENSMUST00000159855 Mycbp2-001 protein_coding Mus_musculus 0 9810
ENSMUST00000161008 Mycbp2-003 protein_coding Mus_musculus 0 6505
ENSDART00000124901 mycbp2-201 protein_coding Danio_rerio 0 3517
ENSDART00000039157 mycbp2-001 protein_coding Danio_rerio 0 3515
ENSMUST00000162762 Mycbp2-005 retained_intron Mus_musculus 0 1910
ENSMUST00000161278 Mycbp2-002 protein_coding Mus_musculus 0 1724
ENSMUST00000162537 Mycbp2-004 retained_intron Mus_musculus 0 632

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