C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 4, group A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545748 NR4A1-003 ENSG00000123358 9606 + 12:52037715-52059501 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K0 CIL_0006K0_0001 CGP 12:52006940-52059507
CIL_0006JQ CIL_0006JQ_0001 CGP 12:52022832-52077494

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001938 IMP positive regulation of endothelial cell proliferation
GO:0002042 IDA cell migration involved in sprouting angiogenesis
GO:0003677 ISS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0007165 TAS signal transduction
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0008270 IEA zinc ion binding
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0030522 IEA intracellular receptor signaling pathway
GO:0035767 IMP endothelial cell chemotaxis
GO:0035914 IEA skeletal muscle cell differentiation
GO:0035924 IMP cellular response to vascular endothelial growth factor stimulus
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0042803 IEA protein homodimerization activity
GO:0043065 IEA positive regulation of apoptotic process
GO:0043154 IEA negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0044344 IMP cellular response to fibroblast growth factor stimulus
GO:0045087 TAS innate immune response
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0071310 IEA cellular response to organic substance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023779 Nr4a1-201 protein_coding Mus_musculus 0 2239
ENSMUST00000149690 Nr5a1-002 retained_intron Mus_musculus 0.00000000000002 86
ENSMUST00000028084 Nr5a1-003 protein_coding Mus_musculus 0.00000000000002 86
ENSMUST00000112883 Nr5a1-001 protein_coding Mus_musculus 0.00000000000002 86

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