C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 5, group A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112883 Nr5a1-001 ENSMUSG00000026751 10090 - 2:38692656-38712234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungPlacentaENSMUST00000112883
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Placenta
ENSMUST00000112883 0.010±0.01 0.003±0.00 0.237±0.22 0.014±0.01 0.015±0.01 0.034±0.03 0.013±0.00 0.005±0.00 0.001±0.00 0.042±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_00075I CIL_00075I_0002 CGP 2:38692656-38927688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001553 IMP luteinization
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003690 IEA double-stranded DNA binding
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0008584 IMP male gonad development
GO:0008585 IEA female gonad development
GO:0009888 IMP tissue development
GO:0010259 IMP multicellular organismal aging
GO:0019899 IEA enzyme binding
GO:0022414 IMP reproductive process
GO:0030154 IGI cell differentiation
GO:0030325 IGI adrenal gland development
GO:0042445 IMP hormone metabolic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051457 IDA maintenance of protein location in nucleus
GO:2000020 IMP positive regulation of male gonad development
GO:2000195 IMP negative regulation of female gonad development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243050 NR4A1-201 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000360284 NR4A1-202 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000373587 NR5A1-002 protein_coding Homo_sapiens 0 881
ENST00000373588 NR5A1-001 protein_coding Homo_sapiens 0 1711
ENST00000394824 NR4A1-002 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000394825 NR4A1-203 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000455734 NR5A1-003 protein_coding Homo_sapiens 0 701
ENST00000545748 NR4A1-003 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000550082 NR4A1-004 protein_coding Homo_sapiens 0.00000000000001 86
ENST00000620110 NR5A1-201 protein_coding Homo_sapiens 0 1066

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