C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 5, group A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028084 Nr5a1-003 ENSMUSG00000026751 10090 - 2:38692660-38714542 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000028084
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000028084 0.013±0.00 448.610±125.40 0.003±0.00 0.004±0.00 0.013±0.00 0.056±0.00 0.487±0.29 0.008±0.00 0.013±0.01 127.366±42.91 0.037±0.02 9.255±3.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_00075I CIL_00075I_0002 CGP 2:38692656-38927688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001553 IMP luteinization
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0008584 IMP male gonad development
GO:0009888 IMP tissue development
GO:0010259 IMP multicellular organismal aging
GO:0022414 IMP reproductive process
GO:0030154 IGI cell differentiation
GO:0030325 IGI adrenal gland development
GO:0042445 IMP hormone metabolic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051457 IDA maintenance of protein location in nucleus
GO:2000020 IMP positive regulation of male gonad development
GO:2000195 IMP negative regulation of female gonad development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243050 NR4A1-201 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000360284 NR4A1-202 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000373587 NR5A1-002 protein_coding Homo_sapiens 0 881
ENST00000373588 NR5A1-001 protein_coding Homo_sapiens 0 1788
ENST00000394824 NR4A1-002 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000394825 NR4A1-203 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000455734 NR5A1-003 protein_coding Homo_sapiens 0 697
ENST00000545748 NR4A1-003 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000550082 NR4A1-004 protein_coding Homo_sapiens 0.00000000000001 86
ENST00000620110 NR5A1-201 protein_coding Homo_sapiens 0 1133

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