C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium homeostasis endoplasmic reticulum protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546361 CHERP-001 ENSG00000085872 9606 - 19:16517889-16542530 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLungOvaryPlacentaTestisENST00000546361
Transcript ID Bladder Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000546361 1.613±0.00 16.853±0.00 17.457±0.00 21.214±0.00 10.355±0.00 2.028±0.00 42.180±16.04 12.049±1.80 30.195±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004DY CIL_0004DY_0002 CGP 19:16496311-16542530
CIL_00071T CIL_00071T_0001 CGP 19:16517889-16572382

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006396 IEA RNA processing
GO:0006874 IDA cellular calcium ion homeostasis
GO:0007399 TAS nervous system development
GO:0008285 IDA negative regulation of cell proliferation
GO:0016020 IDA membrane
GO:0033017 ISS sarcoplasmic reticulum membrane
GO:0044325 IPI ion channel binding
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051209 IMP release of sequestered calcium ion into cytosol
GO:0051533 IMP positive regulation of NFAT protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079510 Cherp-201 protein_coding Mus_musculus 0 2933
ENSDART00000028634 cherp-001 protein_coding Danio_rerio 0 544
ENSDART00000125265 cherp-002 protein_coding Danio_rerio 0 394

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