C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546648 RP11-474C8.4-001 ENSG00000257885 9606 - 12:48168847-48169659 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMuscleTestisENST00000546648
Transcript ID Kidney Muscle Testis
ENST00000546648 0.028±0.00 0.023±0.00 0.254±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068I CIL_00068I_0001 CGP 12:48105139-48181213
CIL_00068H CIL_00068H_0001 CGP 12:48147788-48185926

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125172 Phb-001 protein_coding Mus_musculus 0 854
ENSMUST00000146631 Gm7666-001 transcribed_processed_pseudogene Mus_musculus 0 848
ENSMUST00000117522 1700071K01Rik-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000117258 Gm7781-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000036374 Phb-002 protein_coding Mus_musculus 0 678
ENSMUST00000121346 Gm11383-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000120392 Gm4773-001 processed_pseudogene Mus_musculus 0 606
ENSMUST00000122042 Gm4996-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000123001 Phb-005 processed_transcript Mus_musculus 0 339
ENSMUST00000123071 Phb-004 processed_transcript Mus_musculus 0 318

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