C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prohibitin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125172 Phb-001 ENSMUSG00000038845 10090 + 11:95666957-95680773 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125172 26.747±3.99 19.504±1.00 29.459±1.03 32.868±4.60 16.919±4.17 17.776±2.37 41.047±3.41 49.108±4.38 29.538±14.36 13.577±1.61 35.659±0.96 24.154±7.47 34.778±17.20 22.109±11.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S8 CIL_0004S8_0002 CGP 11:95666957-95835115

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001541 IEA ovarian follicle development
GO:0001552 IEA ovarian follicle atresia
GO:0001649 IEA osteoblast differentiation
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008285 IEA negative regulation of cell proliferation
GO:0010944 IEA negative regulation of transcription by competitive promoter binding
GO:0016020 IEA membrane
GO:0016575 IEA histone deacetylation
GO:0019899 IEA enzyme binding
GO:0030061 IEA mitochondrial crista
GO:0030308 IEA negative regulation of cell growth
GO:0031100 IEA organ regeneration
GO:0031315 IEA extrinsic component of mitochondrial outer membrane
GO:0034097 IEA response to cytokine
GO:0035902 IEA response to immobilization stress
GO:0042493 IEA response to drug
GO:0042826 IEA histone deacetylase binding
GO:0043066 IEA negative regulation of apoptotic process
GO:0043434 IEA response to peptide hormone
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045471 IEA response to ethanol
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0050847 IEA progesterone receptor signaling pathway
GO:0060766 IEA negative regulation of androgen receptor signaling pathway
GO:0070062 IEA extracellular vesicular exosome
GO:0071354 IEA cellular response to interleukin-6
GO:0071897 IMP DNA biosynthetic process
GO:2000323 IEA negative regulation of glucocorticoid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300408 PHB-001 protein_coding Homo_sapiens 0 1254
ENST00000355202 ZNF607-001 protein_coding Homo_sapiens 0 784
ENST00000392260 PHBP1-001 processed_pseudogene Homo_sapiens 0 787
ENST00000393345 PHB-004 retained_intron Homo_sapiens 0 726
ENST00000395835 ZNF607-002 protein_coding Homo_sapiens 0 784
ENST00000412562 PHBP3-001 processed_pseudogene Homo_sapiens 0 953
ENST00000415677 PHBP7-001 processed_pseudogene Homo_sapiens 0 852
ENST00000416467 PHBP10-001 processed_pseudogene Homo_sapiens 0 865
ENST00000419140 PHB-002 protein_coding Homo_sapiens 0 1007
ENST00000420550 PHBP11-001 processed_pseudogene Homo_sapiens 0 878
ENST00000434917 PHB-007 protein_coding Homo_sapiens 0 514
ENST00000437447 PHBP4-001 processed_pseudogene Homo_sapiens 0 643
ENST00000446735 PHB-003 protein_coding Homo_sapiens 0 833
ENST00000453578 PHBP9-001 processed_pseudogene Homo_sapiens 0 791
ENST00000504124 PHB-009 protein_coding Homo_sapiens 0 896
ENST00000506273 PHB-015 processed_transcript Homo_sapiens 0 514
ENST00000507748 PHB-014 retained_intron Homo_sapiens 0 270
ENST00000508009 PHB-013 processed_transcript Homo_sapiens 0 483
ENST00000511832 PHB-201 protein_coding Homo_sapiens 0 630
ENST00000511933 PHB-016 retained_intron Homo_sapiens 0 322
ENST00000512041 PHB-010 protein_coding Homo_sapiens 0 837
ENST00000513412 PHB-011 retained_intron Homo_sapiens 0 193
ENST00000532859 RP11-472I20.2-001 processed_pseudogene Homo_sapiens 0 876
ENST00000546648 RP11-474C8.4-001 processed_pseudogene Homo_sapiens 0 854
ENST00000547512 RP11-416A17.6-001 processed_pseudogene Homo_sapiens 0 592
ENST00000562636 RP11-467J12.1-001 processed_pseudogene Homo_sapiens 0 893
ENST00000603694 RP11-1007O24.4-001 processed_pseudogene Homo_sapiens 0 592
ENST00000614445 PHB-202 protein_coding Homo_sapiens 0 1201
ENST00000617874 PHB-203 protein_coding Homo_sapiens 0 1197

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