C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547247 SMARCD1-003 ENSG00000066117 9606 + 12:50085342-50089422 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungENST00000547247
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung
ENST00000547247 0.546±0.00 0.682±0.00 1.375±0.00 0.599±0.00 0.856±0.00 0.512±0.00 0.882±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_0000F4 CIL_0000F4_0001 CGP 12:50084972-50111319

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023759 Smarcd1-201 protein_coding Mus_musculus 0 1216
ENSMUST00000163472 Gm17349-201 protein_coding Mus_musculus 0 246

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