C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000547702 CNTN1-003 ENSG00000018236 9606 + 12:40692442-40972435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungMuscleOvaryENST00000547702
Transcript ID Brain Colon Heart Lung Muscle Ovary
ENST00000547702 14.948±0.00 0.283±0.00 0.021±0.00 0.743±0.00 0.301±0.00 0.919±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0002 CGP 12:40692442-41574590

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 TAS Notch signaling pathway
GO:0007411 TAS axon guidance
GO:0016020 TAS membrane
GO:0031225 IEA anchored component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169825 Cntn1-201 protein_coding Mus_musculus 0 2058
ENSMUST00000068378 Cntn1-002 protein_coding Mus_musculus 0 1962
ENSMUST00000000109 Cntn1-001 protein_coding Mus_musculus 0 1962
ENSMUST00000141187 Cntn1-003 retained_intron Mus_musculus 0 1142

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